View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10940_low_8 (Length: 397)
Name: NF10940_low_8
Description: NF10940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10940_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 20386247 - 20385874
Alignment:
| Q |
15 |
atacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagtaccaatctgttgtgtattgggatcatccattcttgaatcgtcaccgatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
20386247 |
atacaatccagttccgaacaagaaatcaatccggtcaaccaacaaactagtaccaatctgttgtgtattgggatattccattcttgaatcatcacagatt |
20386148 |
T |
|
| Q |
115 |
ataaatcttgcattcggtatcaaatcaattttcgggagatctcatcactgggttatgtataaagcaaaaaaccatgcttcttcaatagaaagnnnnnnnn |
214 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20386147 |
ataaatcatgcatactgtatcaaatcaattttcgggagatcacatcactgggttatgtataaagcaaaaa-ccatgcttcttcaatagaaagaaaaaaaa |
20386049 |
T |
|
| Q |
215 |
nn-----caccctaccaccacaaattagaacataaaaataggaacatcaagacacgagatagcactgcaatgtagaactacggcgctaccagtgaaggaa |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20386048 |
aagataacaccctagcaccacaaattagaacataaaaataggaacatcaagacatgagatagcactgcaatgtagaactacggcgctaccagtgaaggaa |
20385949 |
T |
|
| Q |
310 |
attatagtttcggggatgagatttataggcttgtttagggttagggcttgacatttgtttttgggctttaactga |
384 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20385948 |
attatagtttcgggtatgagatttataggcttgtttagggttagggcttgacatttgtttttgggctttaactga |
20385874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 20387399 - 20387209
Alignment:
| Q |
15 |
atacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagtaccaatctgttgtgtattgggatcatccattcttgaatcgtcaccgatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20387399 |
atacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagtaccaatctgttgtgtattgggatattccattcttgaatcgtcaccgatt |
20387300 |
T |
|
| Q |
115 |
ataaatcttgcattcggtatcaaatcaattttcgggagatctcatcactgggttatgtataaagcaaaaaaccatgcttcttcaatagaaag |
206 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| |
|
|
| T |
20387299 |
ataaatcatgcatacggtatcaaatcaattttcgggagatctcatcactgggttatgtataaaac-aaaaaccatgcttcttcgaaagaaag |
20387209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 20387015 - 20386825
Alignment:
| Q |
15 |
atacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagtaccaatctgttgtgtattgggatcatccattcttgaatcgtcaccgatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20387015 |
atacaatccagttccgaacaagaaatcaatccgatcaaccaacaaactagtaccaatctgttgtgtattgggatattccattcttgaatcgtcaccgatt |
20386916 |
T |
|
| Q |
115 |
ataaatcttgcattcggtatcaaatcaattttcgggagatctcatcactgggttatgtataaagcaaaaaaccatgcttcttcaatagaaag |
206 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
20386915 |
ataaatcatgcatacggtatcaaatcaattttcgggagatctcatccctgggttatgtataaagca-aaaaccatgcttcttcgaaagaaag |
20386825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 20386631 - 20386441
Alignment:
| Q |
15 |
atacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagtaccaatctgttgtgtattgggatcatccattcttgaatcgtcaccgatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
20386631 |
atacaatccagttccgaacaagaaatcaatccggtcaaccaacaaactagtaccaatctgttgtgtattgggatattccattcttgaatcatcacagatt |
20386532 |
T |
|
| Q |
115 |
ataaatcttgcattcggtatcaaatcaattttcgggagatctcatcactgggttatgtataaagcaaaaaaccatgcttcttcaatagaaag |
206 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
20386531 |
ataaatcatgcatactgtatcaaatcaattttcgggagatctcatccctgggttatgtataaagca-aaaaccatgcttcttcgaaagaaag |
20386441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 20387839 - 20387671
Alignment:
| Q |
24 |
agttccgaacaagaaatcaatccgatctaccaacaaactagtaccaatctgttgtgtattgggatcatccattcttgaatcgtcaccgattata------ |
117 |
Q |
| |
|
|||||| |||||||||| ||||||| | |||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20387839 |
agttccaaacaagaaatttatccgataaaacaacaaacgagtatcaatttgttgtgtattgggat-atccattcttgaatcgtcaccgattataaatcat |
20387741 |
T |
|
| Q |
118 |
---aatcttgcattcggtatcaaatcaattttcgggagatctcatcactgggttatgtataaagcaaaaa |
184 |
Q |
| |
|
|||| ||||| ||| ||| |||||||||| |||| ||||||| | ||||||||||| |||||||||| |
|
|
| T |
20387740 |
ataaatcatgcatacggcatccaatcaatttttgggatatctcattaatgggttatgtaaaaagcaaaaa |
20387671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 20386417 - 20386361
Alignment:
| Q |
217 |
caccctaccaccacaaattagaacataaaaataggaacatcaagacacgagatagca |
273 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20386417 |
caccctagcaccacaaattagaacataaaaataggaatatcaagacacgagatagca |
20386361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 20386801 - 20386745
Alignment:
| Q |
217 |
caccctaccaccacaaattagaacataaaaataggaacatcaagacacgagatagca |
273 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20386801 |
caccctagcaccacaaattagaacataaaaataggaatatcaagacacgagatagca |
20386745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 20387185 - 20387129
Alignment:
| Q |
217 |
caccctaccaccacaaattagaacataaaaataggaacatcaagacacgagatagca |
273 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20387185 |
caccctagcaccacaaattagaacataaaaataggaatatcaagacacgagatagca |
20387129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 34874047 - 34874111
Alignment:
| Q |
316 |
gtttcggggatgagatttata--ggcttgtttagggttagggcttgacatttgtttttgggcttt |
378 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
34874047 |
gtttcggggatgagatttatataggcttatttagggttaggttgtcacatttgtttttgggcttt |
34874111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University