View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10941_high_1 (Length: 428)

Name: NF10941_high_1
Description: NF10941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10941_high_1
NF10941_high_1
[»] chr8 (11 HSPs)
chr8 (114-405)||(25489256-25489547)
chr8 (114-276)||(25646202-25646369)
chr8 (149-276)||(24913783-24913915)
chr8 (114-241)||(25603826-25603951)
chr8 (114-213)||(25799544-25799640)
chr8 (114-176)||(25694637-25694699)
chr8 (114-187)||(25321934-25322004)
chr8 (168-263)||(25569119-25569214)
chr8 (198-247)||(25321889-25321938)
chr8 (168-273)||(25452276-25452379)
chr8 (275-303)||(25385414-25385442)
[»] scaffold0070 (2 HSPs)
scaffold0070 (149-276)||(17826-17951)
scaffold0070 (275-303)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (228-273)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (228-273)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 114 - 405
Target Start/End: Complemental strand, 25489547 - 25489256
Alignment:
Q  114 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  214 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgctcga 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25489447 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcacga 25489348  T
Q  314 aatcaacaagcaaaaaagatgtttnnnnnnnnncaattgcttccagtaattaaactatttgatgatatatcatgaatagttgttgctgcttt 405  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489347 aatcaacaagcaaaaaagatgtttaaaaaaaaacaattgcttccagtaattaaactatttgatgatatatcatgaatagttgttgctgcttt 25489256  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 114 - 276
Target Start/End: Complemental strand, 25646369 - 25646202
Alignment:
Q  114 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  214 attgaatatttctgtcttttatgtcatatcaggtggtg-----tctacttactaggttgctacataat 276  Q
     ||||||||||||||||||||||| ||| |||||||||     |||||||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat 25646202  T

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Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 24913783 - 24913915
Alignment:
Q  149 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttatgttatagcaggtg 24913882  T
Q  249 gt-----gtctacttactaggttgctacataat 276  Q
    ||     ||||||||||||||||||||||||||    
T  24913883 gtgtctagtctacttactaggttgctacataat 24913915  T

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Target: chr8; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  114 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagt-tttt 212  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  25603951 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagtttttt 25603855  T
Q  213 gattgaatatttctgtcttttatgtcata 241  Q
    | ||||||||||||| ||||| |||||||    
T  25603854 ggttgaatatttctgccttttttgtcata 25603826  T

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Target: chr8; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 25799640 - 25799544
Alignment:
Q  114 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttg 213  Q
    ||||||||||||||||||||   ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25799640 ggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttg 25799544  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  114 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  114 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 187  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25322004 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 25569214 - 25569119
Alignment:
Q  168 tgggaagaaaagatcttctattactgaactttctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag 263  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||  ||| |||||| | |||| | ||||||| ||||||||||||| |||||||    
T  25569214 tgggatgaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag 25569119  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 25321938 - 25321889
Alignment:
Q  198 ttctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggt 247  Q
    |||||||||||||||| |||||||| |||| ||||||||||||| |||||    
T  25321938 ttctaatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 25452379 - 25452276
Alignment:
Q  168 tgggaagaaaagatcttctattactgaactttctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttg 267  Q
    ||||| ||| ||||||||||||  ||||||| ||||||| |||||  ||| |||||| | |||| |  ||||||  ||||||||||| |||||||| |||    
T  25452379 tgggatgaacagatcttctatttatgaacttgctaatcatttttttcttgcatatttttttcttgt--gtcatactaggtggtgtctgcttactagtttg 25452282  T
Q  268 ctacat 273  Q
    ||||||    
T  25452281 ctacat 25452276  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
Q  275 atcttgtgtcaaaagtacaaaaatatatt 303  Q
    |||||||||||||||||||||||||||||    
T  25385442 atcttgtgtcaaaagtacaaaaatatatt 25385414  T

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Target: scaffold0070 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 17826 - 17951
Alignment:
Q  149 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 248  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| || | ||||| |||||||||||| ||| ||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttatgttatagcaggtg 17923  T
Q  249 gtgtctacttactaggttgctacataat 276  Q
    ||||||||||||||||||||||||||||    
T  17924 gtgtctacttactaggttgctacataat 17951  T

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Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 18361 - 18389
Alignment:
Q  275 atcttgtgtcaaaagtacaaaaatatatt 303  Q
    |||||||||||||||||||||||||||||    
T  18361 atcttgtgtcaaaagtacaaaaatatatt 18389  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 11146 - 11191
Alignment:
Q  228 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 273  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11146 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11191  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
Q  228 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 273  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11971234 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11971279  T

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