View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10941_high_4 (Length: 251)
Name: NF10941_high_4
Description: NF10941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10941_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38951484 - 38951717
Alignment:
| Q |
18 |
tcaataatgccaccttcagactctatgcggttatcaggttcgagtgcattcagctgctctagctgacactcattttgttgaggctgctgcttttgatgag |
117 |
Q |
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| T |
38951484 |
tcaataatgccaccttcagactctatgcggttatcaggttcgagtgcattcagctgctctagctgacactcattttgttgaggctgctgcttttgatgag |
38951583 |
T |
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| Q |
118 |
gctgatgctctctgatagcaaaacagccactgaaaagtagaaaacaaagtgaaagagagagtgcaagaagcttagccatgatgacagatattggaggact |
217 |
Q |
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| T |
38951584 |
gctgatgctctctaatagcaaaacagccactgaaaagtagaaaacaaagtgaaagagagagtgcaagaagcttagccatgatgacagatattggaggact |
38951683 |
T |
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| Q |
218 |
gttgtttgtgatgaggagaacctcaatgagaact |
251 |
Q |
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| T |
38951684 |
gttgtttgtgatgaggagaacctcaatgagaact |
38951717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 38943994 - 38944166
Alignment:
| Q |
18 |
tcaataatgccaccttcagactctatgcggttatcaggttcgagtgcattcagctgctctagctgacactcattttgttgaggctgctgcttttgatgag |
117 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
38943994 |
tcaataatgccaccttctgactctatacggttatcaggttcaagggcattcagctgctctagctggcattcattttgttgaggctgctgcttttgatgag |
38944093 |
T |
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| Q |
118 |
gctgatgctctctgatagcaaaacagccactgaaaagtagaaaacaaagtgaaagagagagtgcaagaagcttagccatgat |
199 |
Q |
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| T |
38944094 |
gctgatgctctctgatagcaaaacagctacttaaaagtagaa---------aaagagagagtgcaagaagcttagccatgat |
38944166 |
T |
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