View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10941_low_2 (Length: 504)
Name: NF10941_low_2
Description: NF10941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10941_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 36028074 - 36028546
Alignment:
| Q |
18 |
catcgcacaaaagcaatcatacgacatgccagacaacacatgccagactcctcatacaagtgtttcaatcaaattttgggttcttccctttgacacacct |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36028074 |
catcacacaaaagcaatcatacgacatgccagacaacacatgccagactcctcatacaagtgtttcaatcaaattttgggttcttccctttgacacacct |
36028173 |
T |
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| Q |
118 |
ccaatacttggatactcatcaaacacagctataatgagaatggatctacatattttttgcaaaataatagaaataaaaaagctttcaaagtaatctaata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36028174 |
ccaatacttggatactcatcaaacacagctataatgagaatggatctacatattttttgcaaaataatagaaataaaaaagctttcaaagtaatctaata |
36028273 |
T |
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| Q |
218 |
gtattttaattagacatttcaaaagttctgaactcttctttcatacacacattatcatttacgatcttcatctttctttcacggcttcccttttccggac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36028274 |
gtattttaattagacatttcaaaagttctgaactcttctttcatacacacattatcatttacgatcttcatctttctttcacggcttcccttttctggac |
36028373 |
T |
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| Q |
318 |
tccatttcatctgttctactcttcatctaatttggtggtcatcttgattttcagtttagatattttatagatgatacccaaatcaaatttatgtaatatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36028374 |
tccatttcatctgttctactcttcatctaatttggtggtcatcttgattttcagtttagatattttatagatgatacccaaatcaaatctatgtaatatt |
36028473 |
T |
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| Q |
418 |
attatatatgttgctgtcctatattttggacatgagtggtgttgaagagttccgggcggtgtccagtgttcat |
490 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36028474 |
attatatacgttgctgtcctatattttggacatgagtggtgttgaagagttccgggcggtgtccagtgttcat |
36028546 |
T |
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