View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10941_low_7 (Length: 249)
Name: NF10941_low_7
Description: NF10941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10941_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 6390067 - 6389834
Alignment:
| Q |
1 |
cttctgtattgtaccccaagcaagtgggtttagctgtccaatccattatcttttggaaagattctggtgagatattcatacgggaccagataattgccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6390067 |
cttctgtattgtaccccaagcaagtgggtttagctctccaatccattatcttttggaaagattctggtgagatattcatacgggaccagataattgccaa |
6389968 |
T |
|
| Q |
101 |
ctttcacatgctaaaataacaagtgaaagatctcagagaattcttattcaacatttgtattttatactaaccttaatacctcattacttggaatttctct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6389967 |
ctttcacatgctaaaataacaagtgaaagatctcagagaattcttattcaacatttgtattttatactaactttaatacctcattacttggaatttctct |
6389868 |
T |
|
| Q |
201 |
aatcaaaagtcagaa--ttttgtgtgctttattc |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
6389867 |
aatcaaaagtcagaattttttgtgtgctttattc |
6389834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University