View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10942_high_10 (Length: 437)

Name: NF10942_high_10
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10942_high_10
NF10942_high_10
[»] chr5 (3 HSPs)
chr5 (160-395)||(3174734-3174969)
chr5 (1-92)||(3175054-3175146)
chr5 (392-437)||(3174660-3174705)
[»] chr4 (8 HSPs)
chr4 (160-391)||(45144513-45144744)
chr4 (160-395)||(45153289-45153524)
chr4 (160-395)||(23217613-23217848)
chr4 (1-92)||(45144829-45144921)
chr4 (1-92)||(23217436-23217528)
chr4 (392-437)||(45144446-45144491)
chr4 (392-437)||(45153215-45153260)
chr4 (60-92)||(45153609-45153641)
[»] chr8 (10 HSPs)
chr8 (160-395)||(16659390-16659625)
chr8 (160-395)||(38520619-38520854)
chr8 (160-395)||(1668596-1668831)
chr8 (160-395)||(22015404-22015639)
chr8 (1-92)||(38520442-38520534)
chr8 (1-92)||(1668916-1669008)
chr8 (1-92)||(16659710-16659802)
chr8 (1-92)||(22015724-22015816)
chr8 (392-437)||(16659316-16659361)
chr8 (393-437)||(22015330-22015374)
[»] chr2 (6 HSPs)
chr2 (160-395)||(3934686-3934921)
chr2 (160-338)||(38975059-38975237)
chr2 (1-92)||(3934510-3934602)
chr2 (1-92)||(38974888-38974980)
chr2 (392-437)||(3934950-3934995)
chr2 (392-437)||(43189437-43189482)
[»] chr3 (7 HSPs)
chr3 (160-395)||(2338209-2338444)
chr3 (160-381)||(21239672-21239893)
chr3 (292-395)||(52893980-52894083)
chr3 (1-92)||(2338032-2338124)
chr3 (392-437)||(52893906-52893951)
chr3 (61-92)||(21239978-21240009)
chr3 (212-345)||(36230872-36231007)
[»] chr1 (1 HSPs)
chr1 (160-378)||(47192273-47192491)
[»] scaffold0393 (2 HSPs)
scaffold0393 (160-380)||(10948-11147)
scaffold0393 (1-92)||(10771-10863)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 160 - 395
Target Start/End: Complemental strand, 3174969 - 3174734
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174969 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3174870  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3174869 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatttaacattacataaaaatattc 3174770  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||||||||||||    
T  3174769 acaatttcaaacaaccatcaaatatactgcatttta 3174734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3175146 - 3175054
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175146 atgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 3175054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 3174705 - 3174660
Alignment:
Q  392 tttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3174705 tttataaaaagcagagcaaagatgcagagacactcttataaatact 3174660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 160 - 391
Target Start/End: Complemental strand, 45144744 - 45144513
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144744 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45144645  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144644 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 45144545  T
Q  360 acaatttcaaacaaccatcaaatatactgcat 391  Q
    ||||||||||||||||||||||||||||||||    
T  45144544 acaatttcaaacaaccatcaaatatactgcat 45144513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 160 - 395
Target Start/End: Complemental strand, 45153524 - 45153289
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153524 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 45153425  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153424 attttatcataaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 45153325  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||||||||||||    
T  45153324 acaatttcaaacaaccatcaaatatactgcatttta 45153289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 160 - 395
Target Start/End: Original strand, 23217613 - 23217848
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23217613 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 23217712  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23217713 attttatcataaataactcttcttctcttctccaacattaagctacaaccacatagctatcttcttgctccaatttatctaacattacataaaaatattc 23217812  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||  ||||||||    
T  23217813 acaatttcaaacaaccatcaaatatatggcatttta 23217848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 45144921 - 45144829
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144921 atgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 45144829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 23217436 - 23217528
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23217436 atgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaagcatcattgaaaagcaaccaccaaagaca 23217528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 45144491 - 45144446
Alignment:
Q  392 tttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45144491 tttataaaaagcagagcaaagatgcagagacactcttataaatact 45144446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 45153260 - 45153215
Alignment:
Q  392 tttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45153260 tttataaaaagcagagcaaagatgcagagacactcttataaatact 45153215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 45153641 - 45153609
Alignment:
Q  60 ccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||||||||||||||||||||||||||||    
T  45153641 ccaagcatcattgaaaagcaaccaccaaagaca 45153609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 160 - 395
Target Start/End: Complemental strand, 16659625 - 16659390
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659625 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 16659526  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659525 attttatcataaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 16659426  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||| ||||||||    
T  16659425 acaatttcaaacaaccatcaaatatacagcatttta 16659390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 160 - 395
Target Start/End: Original strand, 38520619 - 38520854
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38520619 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 38520718  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38520719 attttatcataaataactcttcttctcttctccaacattaagctacaaccacatagctatcttcttgctccaatttatctaacattacataaaaatattc 38520818  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38520819 acaatttcaaacaaccatcaaatatacggcatttta 38520854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 160 - 395
Target Start/End: Complemental strand, 1668831 - 1668596
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668831 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 1668732  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668731 attttatcataaataactcttcttctcttctccaacattaagctacaaccacatagctatcttcttgctccaatttatctaacattacataaaaatattc 1668632  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||  ||||||||    
T  1668631 acaatttcaaacaaccatcaaatatatggcatttta 1668596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 160 - 395
Target Start/End: Complemental strand, 22015639 - 22015404
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22015639 tggcagtaaggcacagacagctccgaatactaaactatgatctctcctatggctcttgctctagctagttgtgaaactcaaagttcttttctaaggtttc 22015540  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22015539 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatatatctaacattacataaaaatattc 22015440  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22015439 acaatttcaaaaaaccatcaaatatactgcatttta 22015404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38520442 - 38520534
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38520442 atgaggccgaagtatatactagcatagagcaagcataccccttcctcactcctgaactagccaagcatcattgaaaagcaaccaccaaagaca 38520534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1669008 - 1668916
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1669008 atgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaagcatcattgaaaagcaaccaccaaagaca 1668916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16659802 - 16659710
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16659802 atgaggccgaagtatatactagcatagagcaagcatacccctgcatcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 16659710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 22015816 - 22015724
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  22015816 atgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcctgaactagccaagcatcattgaaaagcatccaccaaagaca 22015724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 16659361 - 16659316
Alignment:
Q  392 tttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16659361 tttataaaaagcagagcaaagatgcagagacactcttataaatact 16659316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 22015374 - 22015330
Alignment:
Q  393 ttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  22015374 ttatataaagcagagcaaagatgcagagacactcttataaatact 22015330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 160 - 395
Target Start/End: Original strand, 3934686 - 3934921
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934686 tggcagtaaggcacagacagctctgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 3934785  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934786 attttatcataaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 3934885  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||||||||||||    
T  3934886 acaatttcaaacaaccatcaaatatactgcatttta 3934921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 160 - 338
Target Start/End: Original strand, 38975059 - 38975237
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38975059 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctcaagctagttgtcaaactcaaagttcttttctaaggtttc 38975158  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatc 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38975159 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatatctatcttcttgctccaatttatc 38975237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 3934510 - 3934602
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3934510 atgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagacaagcatcattgaaaagcaaccaccaaagaca 3934602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38974888 - 38974980
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38974888 atgaggccgaagtatatactagcatagagtaagcatacccctgcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 38974980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 3934950 - 3934995
Alignment:
Q  392 tttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3934950 tttataaaaagcagagcaaagatgcagagacactcttataaatact 3934995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 43189482 - 43189437
Alignment:
Q  392 tttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  43189482 tttataaaaagcagagcaaagatgcagagacactcttatgaatact 43189437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 160 - 395
Target Start/End: Original strand, 2338209 - 2338444
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338209 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 2338308  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2338309 attttatcataaataactcttcttctcttctccaacattaagctacaaccacatagctatcttcttgctccaatttatctaacattacatgaaaatattc 2338408  T
Q  360 acaatttcaaacaaccatcaaatatactgcatttta 395  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2338409 acaatttcaaacaaccatcaaatatacggcatttta 2338444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 160 - 381
Target Start/End: Complemental strand, 21239893 - 21239672
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21239893 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttcaaaggtttc 21239794  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21239793 attttatcataaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 21239694  T
Q  360 acaatttcaaacaaccatcaaa 381  Q
    ||||||||||||||||||||||    
T  21239693 acaatttcaaacaaccatcaaa 21239672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 52894083 - 52893980
Alignment:
Q  292 caacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattcacaatttcaaacaaccatcaaatatactgcat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52894083 caacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattcacaatttcaaacaaccatcaaatatactgcat 52893984  T
Q  392 ttta 395  Q
    ||||    
T  52893983 ttta 52893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2338032 - 2338124
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2338032 atgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagccaagcatcattgaaaagcaaccaccaaagaca 2338124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 52893951 - 52893906
Alignment:
Q  392 tttataaaaagcagagcaaagatgcagagacactcttataaatact 437  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  52893951 tttacaaaaagcagagcaaagatgcagagacactcttataaatact 52893906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 92
Target Start/End: Complemental strand, 21240009 - 21239978
Alignment:
Q  61 caagcatcattgaaaagcaaccaccaaagaca 92  Q
    ||||||||||||||||||||||||||||||||    
T  21240009 caagcatcattgaaaagcaaccaccaaagaca 21239978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 345
Target Start/End: Original strand, 36230872 - 36231007
Alignment:
Q  212 ctcttgctctagctagttgtcaaactcaaagttcttttctaagg-tttcattttatcatgaataactcttcttctcttctccaacattaagctacaaccg 310  Q
    |||| ||||||||| |||||| || |||||  |||||||||| | ||| | || ||||| |  || ||||||| ||||||||||||||   |||| | |     
T  36230872 ctctggctctagcttgttgtccaattcaaaactcttttctaaagcttttacttgatcataaccaagtcttcttttcttctccaacattggactaccatct 36230971  T
Q  311 -catagctatcttcttgctccaatttatctaacatt 345  Q
     ||||||||||||||||||||||| |||||||||||    
T  36230972 tcatagctatcttcttgctccaatctatctaacatt 36231007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 160 - 378
Target Start/End: Complemental strand, 47192491 - 47192273
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttcttttctaaggtttc 259  Q
    |||||| ||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  47192491 tggcagcaaggcccggacaggtccaaatactaaaccatgatctctcctatggctcttgctctatctagttgtcaaactcaaagttcttttctaaggtttt 47192392  T
Q  260 attttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatattc 359  Q
    | || ||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  |||||    
T  47192391 acttgatcataaataactattcttctcttctccagcattaagctacaaccgcatggctatcttcttgctccaatttatctaacattacatagatttattc 47192292  T
Q  360 acaatttcaaacaaccatc 378  Q
    ||| |||||||||||||||    
T  47192291 acagtttcaaacaaccatc 47192273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 160 - 380
Target Start/End: Original strand, 10948 - 11147
Alignment:
Q  160 tggcagtaaggcacagacagctccgaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttctttt-ctaaggttt 258  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10948 tggcagtaaggcacagacagctctaaatactaaaccatgatctctcctatggctcttgctctagctagttgtcaaactcaaagttctttttctaaggttt 11047  T
Q  259 cattttatcatgaataactcttcttctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatatt 358  Q
    |||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11048 cat----------------------ctcttctccaacattaagctacaaccgcatagctatcttcttgctccaatttatctaacattacataaaaatatt 11125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 10771 - 10863
Alignment:
Q  1 atgaggccaaagtatatactagcatcc-gcaagcataccccttcctcactcccgaactagccaagcatcattgaaaagcaaccaccaaagaca 92  Q
    |||||||| ||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10771 atgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagccaagcatcattgaaaaccaaccaccaaagaca 10863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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