View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10942_high_15 (Length: 370)

Name: NF10942_high_15
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10942_high_15
NF10942_high_15
[»] chr6 (8 HSPs)
chr6 (259-361)||(26812096-26812198)
chr6 (259-361)||(26618208-26618310)
chr6 (259-361)||(26724136-26724238)
chr6 (72-189)||(28242307-28242426)
chr6 (72-149)||(25105429-25105506)
chr6 (113-181)||(27671388-27671458)
chr6 (278-356)||(27664733-27664811)
chr6 (113-150)||(27672348-27672385)
[»] chr1 (1 HSPs)
chr1 (267-357)||(26136463-26136553)
[»] scaffold0038 (1 HSPs)
scaffold0038 (72-189)||(42469-42588)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 259 - 361
Target Start/End: Complemental strand, 26812198 - 26812096
Alignment:
Q  259 aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca 358  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  26812198 aagtcccacaatagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgtaactatcttcttaataaactcatattcatatgca 26812099  T
Q  359 tct 361  Q
    |||    
T  26812098 tct 26812096  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 361
Target Start/End: Complemental strand, 26618310 - 26618208
Alignment:
Q  259 aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca 358  Q
    |||||| |||||  |||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||  ||||||||||| ||||||||||||    
T  26618310 aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca 26618211  T
Q  359 tct 361  Q
    |||    
T  26618210 tct 26618208  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 361
Target Start/End: Complemental strand, 26724238 - 26724136
Alignment:
Q  259 aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca 358  Q
    |||||| |||||  |||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||  ||||||||||| ||||||||||||    
T  26724238 aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca 26724139  T
Q  359 tct 361  Q
    |||    
T  26724138 tct 26724136  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 28242307 - 28242426
Alignment:
Q  72 aaaaatcaaactgaaattttcaggcgggatcttaaaaataaattgagcgtttaagtgatattttgtttggacctcaaaaat--ttccgatatttaatctc 169  Q
    |||| ||||| ||| ||||||||  |||| | ||||||| ||||||  | |||||| ||||||||||| |||||||||| |  || ||||||||||||||    
T  28242307 aaaagtcaaattgacattttcagatgggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc 28242406  T
Q  170 atctaccaaactgatatttc 189  Q
    |||||||||||||| |||||    
T  28242407 atctaccaaactgacatttc 28242426  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 25105506 - 25105429
Alignment:
Q  72 aaaaatcaaactgaaattttcaggcgggatcttaaaaataaattgagcgtttaagtgatattttgtttggacctcaaa 149  Q
    |||||||||||||| |||  || | |||| | ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  25105506 aaaaatcaaactgacattcccaagtgggaccctaaaaatgaattgagagcttaagtgatattttgtttggacctcaaa 25105429  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 27671388 - 27671458
Alignment:
Q  113 attgagcgtttaagtgatattttgtttggacctcaaaa--atttccgatatttaatctcatctaccaaact 181  Q
    |||||| | ||||||||||||||||||||| |||||||   |||| ||||||||||| |||||||||||||    
T  27671388 attgagagcttaagtgatattttgtttggatctcaaaagtctttctgatatttaatcacatctaccaaact 27671458  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 27664733 - 27664811
Alignment:
Q  278 tcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatatt 356  Q
    |||||||| | |||| ||| |||||||||||||||||| |  ||||||||||| |||| |||||| |  ||||||||||    
T  27664733 tcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaatttgtattcatatt 27664811  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 27672348 - 27672385
Alignment:
Q  113 attgagcgtttaagtgatattttgtttggacctcaaaa 150  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  27672348 attgagagtttaagtgatattttgtatggacctcaaaa 27672385  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 26136553 - 26136463
Alignment:
Q  267 caacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattc 357  Q
    |||| |||||||| ||||| | ||||||| |||||||||||||||| |||||| ||||||||||||  ||||||||||||||||| |||||    
T  26136553 caacggggtgatcggcaacatgtaaaagaacacggttgatcttgtttgaaatcactgtaactatcttcttaataaactcatattcgtattc 26136463  T

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Target: scaffold0038 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 42469 - 42588
Alignment:
Q  72 aaaaatcaaactgaaattttcaggcgggatcttaaaaataaattgagcgtttaagtgatattttgtttggacctcaaaaat--ttccgatatttaatctc 169  Q
    |||| ||||| ||| ||||||||  |||| | ||||||| ||||||  | |||||| ||||||||||| |||||||||| |  || ||||||||||||||    
T  42469 aaaagtcaaattgacattttcagatgggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc 42568  T
Q  170 atctaccaaactgatatttc 189  Q
    |||||||||||||| |||||    
T  42569 atctaccaaactgacatttc 42588  T

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