View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_high_18 (Length: 343)
Name: NF10942_high_18
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_high_18 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 28730893 - 28731216
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28730893 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctcttcgtattttaccttcattgcaagggagaggatgctgaaaccgttattacgg |
28730992 |
T |
|
| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28730993 |
agcctgagcgttgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggagtgtgaacatgagcactggaacggtgatcaggatgaa |
28731092 |
T |
|
| Q |
201 |
acggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731093 |
acggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
28731192 |
T |
|
| Q |
301 |
gaatagatctggttgagtaatctc |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28731193 |
gaatagatctggttgagtaatctc |
28731216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 38121319 - 38121642
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
38121319 |
aagatcatcaacagcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatagcaagggagaggatgctgaaaccgttattacgg |
38121418 |
T |
|
| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
| |
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||||| | | || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
38121419 |
agccttaccattgcatctcgtagcatgaggcgcataatagcagggagcacggtggcgccgggagtgtgaacatgagcaccggaacggtgatcaggatgaa |
38121518 |
T |
|
| Q |
201 |
acggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
300 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121519 |
acggaaaggagagagaactcattctctcaacgtcgcaagaaaacggagaaagcttagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
38121618 |
T |
|
| Q |
301 |
gaatagatctggttgagtaatctc |
324 |
Q |
| |
|
||||||||| |||||||||||||| |
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| T |
38121619 |
gaatagatccggttgagtaatctc |
38121642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 38608804 - 38608481
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
38608804 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacgg |
38608705 |
T |
|
| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
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||||||||| || |||||||||||||||||||| |||||||| ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||| |
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| T |
38608704 |
agcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaa |
38608605 |
T |
|
| Q |
201 |
acggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38608604 |
acggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
38608505 |
T |
|
| Q |
301 |
gaatagatctggttgagtaatctc |
324 |
Q |
| |
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||||||||| ||||||| |||||| |
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| T |
38608504 |
gaatagatccggttgagcaatctc |
38608481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 38793587 - 38793264
Alignment:
| Q |
1 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
38793587 |
aagatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacgg |
38793488 |
T |
|
| Q |
101 |
agcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaa |
200 |
Q |
| |
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||||||||| || |||||||||||||||||||| |||||||| ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||| |
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| T |
38793487 |
agcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaa |
38793388 |
T |
|
| Q |
201 |
acggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38793387 |
acggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccattccgttgtt |
38793288 |
T |
|
| Q |
301 |
gaatagatctggttgagtaatctc |
324 |
Q |
| |
|
||||||||| ||||||| |||||| |
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| T |
38793287 |
gaatagatccggttgagcaatctc |
38793264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 34038 - 34174
Alignment:
| Q |
188 |
tgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaa |
287 |
Q |
| |
|
||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||| |||||||||| |||| |||| ||||||||||||||| |||| ||| | |
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| T |
34038 |
tgatctggatggaacgggaacgagagcgaggtcatcctctccacgtcgcaataaaacggagagagcggagagatgaaaccttgaaggccatgaataacca |
34137 |
T |
|
| Q |
288 |
ccattccgttgttgaatagatctggttgagtaatctc |
324 |
Q |
| |
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|||| ||||||||||| ||||| ||||| || ||||| |
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| T |
34138 |
ccatgccgttgttgaagagatcaggttgcgtgatctc |
34174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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