View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_high_4 (Length: 522)
Name: NF10942_high_4
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 18221685 - 18221190
Alignment:
| Q |
18 |
caaattgcccagttcaaataaaatgtgtgaaccttgtaatggtaatataaaaaagctcactctttttcatttgattttaagtataacataaaaagctctc |
117 |
Q |
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| T |
18221685 |
caaattgcccagttcaaataaaatgtgtgaaccttgtaatggtaatataaaaaagctcactctttttcatttgattttaagtataacataaaaagatctc |
18221586 |
T |
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| Q |
118 |
tcttttatttcaaacactttatgaagttctaaaaatgtcatctttgttgggtttcatttcatatactagttgttgaaatcttgtaggtcagtgacaaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221585 |
tcttttatttcaaacactttatgaagttctaaaaatgtcatctttgttgggtttcatttcatatactagttgttgaaatcttgtaggtcagtgacaaagg |
18221486 |
T |
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| Q |
218 |
ggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccagaggggaagaaaatccctaca |
317 |
Q |
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| T |
18221485 |
ggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccagaggggaagaaaatccctaca |
18221386 |
T |
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| Q |
318 |
cttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatggagct |
417 |
Q |
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| T |
18221385 |
cttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatggagct |
18221286 |
T |
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| Q |
418 |
tctgggcctctcctcctaagagcccagttatcaatgatgccgctactagtttggttcccaagcagggttcatgtttgtctgagatcaagttctctg |
513 |
Q |
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| T |
18221285 |
tctgggcctctcctcctaagagcccagttatcaatgatgctgctactagtttggttcccaagcagggttcatgtttgtctgagatcaagttctctg |
18221190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 5077237 - 5077294
Alignment:
| Q |
18 |
caaattgcccagttcaaataaaatgtgtgaaccttgtaatggtaatataaaaaagctc |
75 |
Q |
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| T |
5077237 |
caaattgcccagttcaaataaaatgtgtgaaccttgtaatggtaatataaaaaagctc |
5077294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 358 - 505
Target Start/End: Complemental strand, 43013060 - 43012913
Alignment:
| Q |
358 |
aaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatggagcttctgggcctctcctcctaagagcccagttatcaatgatgc |
457 |
Q |
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| T |
43013060 |
aaacactctgtagaagcatctcagctaacgaatttgctgagaaaggaaactcatggagtttttgggtctctcctcctatgagcccagttatcaatgatgc |
43012961 |
T |
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| Q |
458 |
cgctactagtttggttcccaagcagggttcatgtttgtctgagatcaa |
505 |
Q |
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| T |
43012960 |
tgctactagtttggttcccaagcagggttcatgttggtctgagatcaa |
43012913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 139 - 298
Target Start/End: Complemental strand, 43013214 - 43013060
Alignment:
| Q |
139 |
tgaagttctaaaaatgtcatctttgttgggtttcatttcatatactagttgttgaaatcttgtaggtcagtgacaaaggggagcaaaaagtatctctaag |
238 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
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| T |
43013214 |
tgaagttctgaaaatgtcatctttgttgggtttcattt-----actagatgttgaaatcttgtaggtcactgacaaatgggagcaggaagtatctctaag |
43013120 |
T |
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| Q |
239 |
gtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccaga |
298 |
Q |
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| T |
43013119 |
gtatccaagcctcaaatctcttagcactcactttaaagatcaatgctttggaaagccaga |
43013060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 43013515 - 43013438
Alignment:
| Q |
18 |
caaattgcccagttcaaataaaatgtgtgaaccttgtaatggtaatataaaaaag--ctcactctttttcatttgatt |
93 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43013515 |
caaattgcccagttcaaatcaaatgtgtgaaccttgtaatggtaatataaaaaagctctcactctttttcatttgatt |
43013438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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