View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_high_5 (Length: 518)
Name: NF10942_high_5
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 42655987 - 42655488
Alignment:
| Q |
1 |
ggaggatctgaggtaaggaaatcataattcaaagcaatattagcctattcaattcatgtttgtttctacttgctagttctatttgaattttcatctgcta |
100 |
Q |
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| T |
42655987 |
ggaggatctgaggtaaggaaatcataattcaaagcaatattagcctattcaattcatgtttgtttctacttgctagttctatttgaattttcatctgcta |
42655888 |
T |
|
| Q |
101 |
attcttgaatcattgtaaactatattatgttaggcaatatatcaggaaacggtagaagatgaagttaaggccactaagaaagttcctgttggtcctatac |
200 |
Q |
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| T |
42655887 |
attcttgaatcattgtaaactatattatgttaggcaatatatcaggaaacggtagaagatgaagttaaggccactaagaaagttcctgttggtcctatac |
42655788 |
T |
|
| Q |
201 |
acaaattaatagcagagaataccaagtcaaacagtttggtcatgaaggtaatttctaaactcagatttcctgaaagtggaatagagtttggcaaaatcat |
300 |
Q |
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| T |
42655787 |
acaaattaatagcagagaataccaagtcaaacagtttggtcatgaaggtaatttctaaactcagttttcctgaaagtggaatagagtttggcaaaatcat |
42655688 |
T |
|
| Q |
301 |
agtggcagtgttattttcgtagcgtttgtcaaaatcgttgtagtccacttatctgtcaatccaaacatgcacgtaatgttacacttacacgttccgtttt |
400 |
Q |
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| T |
42655687 |
agtggcagtgttattttcgtagcgtttgtcaaaatcgttgtagtccacttatctatcaatccaaacatgcacgtaatgttacacttacacgttccgtttt |
42655588 |
T |
|
| Q |
401 |
gaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgattcctgctcatatcatagctgaagcaatatcaactatccgcgacatt |
500 |
Q |
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| T |
42655587 |
gaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgattcctgctcatatcatagctgaagcaatatcaactatccgcgacatt |
42655488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 43052029 - 43052225
Alignment:
| Q |
55 |
catgtttgtttctacttgctagttctatttgaattttcatctgctaattcttgaatcattgtaaactatattatgttaggcaatatatcaggaaacggta |
154 |
Q |
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||||||| || ||||||| ||||||||||| |||||||| ||||| |||| ||| |||||||||| || ||| |||||||||||||| |||| |
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| T |
43052029 |
catgtttattcctacttgttagttctatttcaattttcaactgct------tgaacaattctaaactatat---gtcaggaaatatatcaggaaatggta |
43052119 |
T |
|
| Q |
155 |
gaagatgaagttaaggccactaagaaagttcctgttggtcctatacacaaattaatagcagagaataccaagtcaaacagtttggtcatgaaggtaattt |
254 |
Q |
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| T |
43052120 |
gaagatgaagttaagggcactcataaagttcctattggaccaatacacaaaccaatagcacagaaggccaaatcagacagtttggtcgtgaaggtaattt |
43052219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 43052390 - 43052488
Alignment:
| Q |
397 |
ttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgattcctgctcatatcatagctgaagcaatatcaactatccgcg |
495 |
Q |
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||||||||||||||| | |||| |||||| ||| ||| ||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43052390 |
ttttgaaactaacaaaagacttgtaattggtacataagcagaaagcacatgtggagattcctgctcatatcatagctgaagcaatatcaacaatccgcg |
43052488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 45479770 - 45479725
Alignment:
| Q |
451 |
tgattcctgctcatatcatagctgaagcaatatcaactatccgcga |
496 |
Q |
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||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
45479770 |
tgattccagctcacatcatagctgaagcgatatcaactatccgcga |
45479725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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