View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10942_high_6 (Length: 497)

Name: NF10942_high_6
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10942_high_6
NF10942_high_6
[»] chr4 (8 HSPs)
chr4 (20-293)||(48173819-48174092)
chr4 (291-488)||(48174878-48175075)
chr4 (134-194)||(11028815-11028875)
chr4 (22-194)||(19987705-19987879)
chr4 (135-232)||(7833755-7833853)
chr4 (132-201)||(45015667-45015737)
chr4 (135-201)||(8107135-8107201)
chr4 (132-173)||(18936206-18936247)
[»] chr1 (7 HSPs)
chr1 (22-194)||(32025010-32025184)
chr1 (22-194)||(32025306-32025480)
chr1 (133-194)||(32025602-32025664)
chr1 (137-212)||(34228434-34228510)
chr1 (112-173)||(50014009-50014069)
chr1 (135-194)||(31412393-31412453)
chr1 (116-156)||(44462004-44462044)
[»] chr6 (3 HSPs)
chr6 (135-252)||(4140077-4140195)
chr6 (135-194)||(30045506-30045566)
chr6 (87-179)||(35033136-35033229)
[»] chr2 (11 HSPs)
chr2 (22-194)||(26533338-26533512)
chr2 (112-174)||(44279086-44279148)
chr2 (134-194)||(8596463-8596524)
chr2 (116-160)||(4919139-4919183)
chr2 (135-194)||(26533635-26533695)
chr2 (41-153)||(27187113-27187225)
chr2 (41-153)||(27836655-27836767)
chr2 (41-153)||(27836927-27837039)
chr2 (132-190)||(14913562-14913621)
chr2 (135-173)||(31074296-31074334)
chr2 (113-173)||(3736308-3736368)
[»] chr7 (9 HSPs)
chr7 (107-196)||(37223605-37223693)
chr7 (133-247)||(37223841-37223956)
chr7 (134-175)||(8356210-8356251)
chr7 (22-173)||(3958234-3958385)
chr7 (134-195)||(2414305-2414367)
chr7 (135-196)||(13789497-13789559)
chr7 (132-201)||(25194475-25194545)
chr7 (113-201)||(7741704-7741793)
chr7 (112-173)||(23072132-23072193)
[»] scaffold0007 (1 HSPs)
scaffold0007 (133-194)||(262180-262242)
[»] chr8 (3 HSPs)
chr8 (22-226)||(33446001-33446207)
chr8 (132-212)||(21008417-21008498)
chr8 (112-173)||(34373871-34373931)
[»] chr3 (2 HSPs)
chr3 (135-194)||(7407884-7407944)
chr3 (135-173)||(3870769-3870807)
[»] chr5 (5 HSPs)
chr5 (87-212)||(15226074-15226200)
chr5 (134-194)||(10567399-10567460)
chr5 (112-173)||(36976008-36976069)
chr5 (135-201)||(15173456-15173523)
chr5 (133-217)||(22586964-22587049)
[»] scaffold0251 (1 HSPs)
scaffold0251 (132-173)||(12682-12723)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 48173819 - 48174092
Alignment:
Q  20 ggtggtagcccttttctttctgcggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctc 119  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||    
T  48173819 ggtggcagcccttttctttttgcggcttcactgacctatcaatatttggtggagtactttagttctgcctataggtagtcatttttgtggcacaactatc 48173918  T
Q  120 aatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaaaatagttcattaggtgggagagcatcataactttagtactacattg 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48173919 aatgaaatcagtaattgttaggacttaagcctatgaggagagtccaacccaaaaaatagttcattaggtgggagagcatcataactttagtactacattg 48174018  T
Q  220 atcacttttatcttctcaacgtgagacttctaattctaacctttgttgtaaaagttagtacaagtttttcaaca 293  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48174019 atcacttttatcttctcaacgtgagacttctaactctaacctttgttgtaaaagttagtacaagtttttcaaca 48174092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 291 - 488
Target Start/End: Original strand, 48174878 - 48175075
Alignment:
Q  291 acatttaatcaaaatcaacttttttcacttcgagtcaaacctaagttatctcaatagtaaaacatgtctagttactaaaatcacattcaatagagagaca 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48174878 acatttaatcaaaatcaacttttttcacttcgagtcaaacctaagttatcttaatagtaaaacatgtctagtttctaaaatcacattcaatagagagaca 48174977  T
Q  391 caatcaatttgacattggtcattctctctgcatttaaatggaacttattatactaaacaatgattttgcagacgagtctaaagtttcacctcctatgc 488  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48174978 aaatcaatttgacattggtgattctctctgcatttaaatggaacttattatactaaacaatgattttgcagacgagtctaaagtttcacctcctatgc 48175075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 11028875 - 11028815
Alignment:
Q  134 ttgttaggacttaagcctatgaggagagtccaacccaaaaaatagttcattaggtgggaga 194  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||| ||||    
T  11028875 ttgttaggacttaagcccatgagaagagaccaacccaaaaaatagtccattaggtgagaga 11028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 19987879 - 19987705
Alignment:
Q  22 tggtagcccttttctttctgc-ggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctca 120  Q
    |||||||||||| |||| ||  ||||||||| |||||||| |||| ||||||  || ||| | |  ||||||||||| | |||  ||||  |||||||||    
T  19987879 tggtagccctttcctttttggaggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctca 19987780  T
Q  121 atgaaatcaataattgttaggacttaagcctatgaggagagtccaaccca-aaaaatagttcattaggtgggaga 194  Q
    |||||| ||  ||||||||||||||||| | |||||||||| | |||||| || | |||| || |||||||||||    
T  19987779 atgaaagcaccaattgttaggacttaagtccatgaggagagcctaacccagaagactagtccaataggtgggaga 19987705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 7833755 - 7833853
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggagagcatcataactttagtactacattgatcacttttatct 232  Q
    |||||||||||||||| ||||||  |  ||||||||||| | |||| |||||||||||||||| |||| |||| ||||| ||||  | |||||||||||    
T  7833755 tgttaggacttaagcccatgagggaaacccaacccaaaagactagtccattaggtgggagagcctcatgacttaagtaccacatcaagcacttttatct 7833853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 45015667 - 45015737
Alignment:
Q  132 aattgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggagagcatcat 201  Q
    ||||||||||||||||||| |||| |||||||| |||||||||| |||| |||||| | ||||||| ||||    
T  45015667 aattgttaggacttaagcccatgaagagagtccgacccaaaaaactagtccattagataggagagcctcat 45015737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 8107135 - 8107201
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaaaatagttcattaggtgggagagcatcat 201  Q
    |||||||||||||||| ||||||||||||||||  ||| | |||| || | ||||||||| ||||||    
T  8107135 tgttaggacttaagcccatgaggagagtccaacgaaaagattagtccaatgggtgggagaacatcat 8107201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 18936247 - 18936206
Alignment:
Q  132 aattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    |||| |||||||||||||| |||||||||| |||||||||||    
T  18936247 aattcttaggacttaagcccatgaggagagcccaacccaaaa 18936206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 32025184 - 32025010
Alignment:
Q  22 tggtagcccttttctttctg-cggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctca 120  Q
    |||||||||||| |||| || |||||||||| |||||||| |||| ||||||  || ||| | |  ||||||||||| | |||  ||||  |||||||||    
T  32025184 tggtagccctttcctttttggcggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctca 32025085  T
Q  121 atgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggaga 194  Q
    |||||| ||  ||||||||||||||||||| |||||||||| ||||||||||||| |||| || |||||||||||    
T  32025084 atgaaagcaccaattgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggaga 32025010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 32025480 - 32025306
Alignment:
Q  22 tggtagcccttttctttctg-cggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctca 120  Q
    |||||||||||| |||| || |||||||||| |||||||| |||| ||||||  || ||| | |  ||||||||||| | |||  ||||  |||||||||    
T  32025480 tggtagccctttcctttttggcggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctca 32025381  T
Q  121 atgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggaga 194  Q
    |||||| ||  ||||||||||||||||||| |||||||||| ||||||||||||| |||| || |||||||||||    
T  32025380 atgaaagcaccaattgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggaga 32025306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 32025664 - 32025602
Alignment:
Q  133 attgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggaga 194  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||| || |||||||||||    
T  32025664 attgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggaga 32025602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 34228434 - 34228510
Alignment:
Q  137 ttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggagagcatcataactttagtac 212  Q
    |||||||||||| | |||||||||||||||||||||| | |||| ||||| |||||||||| ||||| ||| |||||    
T  34228434 ttaggacttaagtccatgaggagagtccaacccaaaagactagtccattaagtgggagagcctcatagcttaagtac 34228510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 50014009 - 50014069
Alignment:
Q  112 caactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    ||||||||||||||| ||  |||||| |||||||||||| || ||||||| |||||||||||    
T  50014009 caactctcaatgaaagcaccaattgtaaggacttaagcccattaggagag-ccaacccaaaa 50014069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 31412393 - 31412453
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggaga 194  Q
    ||||||||| |||| | |||||||||||||||||||||| | ||||| | |||||||||||    
T  31412393 tgttaggacctaagtccatgaggagagtccaacccaaaagactagttgaataggtgggaga 31412453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 44462044 - 44462004
Alignment:
Q  116 tctcaatgaaatcaataattgttaggacttaagcctatgag 156  Q
    ||||||||||| || |||||||||||||||||||| |||||    
T  44462044 tctcaatgaaaacactaattgttaggacttaagcccatgag 44462004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 4140195 - 4140077
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggagagcatcataactttagtactacattgatcacttttatctt 233  Q
    |||||||| ||||||| |||| ||||||||||||||||| | |||||||||| |||||||||  ||||  ||| ||||| | ||||| |||||||||||     
T  4140195 tgttaggatttaagcccatgaagagagtccaacccaaaagactagttcattacgtgggagagtctcatggcttaagtaccatattgagcacttttatcta 4140096  T
Q  234 ctcaacgtgagacttctaa 252  Q
     |||| |||||||||||||    
T  4140095 ttcaatgtgagacttctaa 4140077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 30045566 - 30045506
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggaga 194  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||| || |||||||||||    
T  30045566 tgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggaga 30045506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 35033229 - 35033136
Alignment:
Q  87 cctataggtagtcattttagtggcacaactctcaatgaaatcaataattgttaggacttaa-gcctatgaggagagtccaacccaaaaaatagt 179  Q
    ||||||| |||||||||   |||  |||||||||| |||| ||  |||||||||||||||| | | |||| |||||||||||||||||| ||||    
T  35033229 cctatagatagtcatttctatggtccaactctcaacgaaagcaccaattgttaggacttaaagtcaatgatgagagtccaacccaaaaactagt 35033136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 26533512 - 26533338
Alignment:
Q  22 tggtagcccttttctttctgc-ggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctca 120  Q
    |||||||||||| |||| ||  ||||||||| |||||||| |||| ||||||  || ||| | |  ||||||||||| | |||   |||  |||||||||    
T  26533512 tggtagccctttcctttttggtggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccatggtccaactctca 26533413  T
Q  121 atgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggaga 194  Q
    |||||| ||  || |||||||||||||||| |||||||||| ||||||||||| | |||| ||||||||||||||    
T  26533412 atgaaagcaccaactgttaggacttaagcccatgaggagagcccaacccaaaagactagtccattaggtgggaga 26533338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 44279148 - 44279086
Alignment:
Q  112 caactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaaa 174  Q
    ||||||||||||||| ||  |||||||||||||||| ||  ||||||||| ||||||||||||    
T  44279148 caactctcaatgaaagcaccaattgttaggacttaaacccgtgaggagagcccaacccaaaaa 44279086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 8596463 - 8596524
Alignment:
Q  134 ttgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggaga 194  Q
    ||||||||||||||||| | |||||||| ||||||||||||| |||| || |||||||||||    
T  8596463 ttgttaggacttaagcccacgaggagagcccaacccaaaaaactagtccaataggtgggaga 8596524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 4919139 - 4919183
Alignment:
Q  116 tctcaatgaaatcaataattgttaggacttaagcctatgaggaga 160  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||    
T  4919139 tctcaatgaaaacaataattgttaggacttaatcctattaggaga 4919183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 26533695 - 26533635
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggaga 194  Q
    |||||||||||||||| |||||||||| ||||||||||| | |||| || |||||||||||    
T  26533695 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccaataggtgggaga 26533635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 27187113 - 27187225
Alignment:
Q  41 gcggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctcaatgaaatcaataattgttag 140  Q
    ||||||||| | |||||||| |||| ||||||  || ||| | |  ||||||||||| | |||  ||||  ||||||||||||||| ||  |||||||||    
T  27187113 gcggcttcaatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagcaccaattgttag 27187212  T
Q  141 gacttaagcctat 153  Q
    |||||||||||||    
T  27187213 gacttaagcctat 27187225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 27836655 - 27836767
Alignment:
Q  41 gcggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctcaatgaaatcaataattgttag 140  Q
    ||||||||| | |||||||| |||| ||||||  || ||| | |  ||||||||||| | |||  ||||  ||||||||||||||| ||  |||||||||    
T  27836655 gcggcttcaatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagcaccaattgttag 27836754  T
Q  141 gacttaagcctat 153  Q
    |||||||||||||    
T  27836755 gacttaagcctat 27836767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 27836927 - 27837039
Alignment:
Q  41 gcggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctcaatgaaatcaataattgttag 140  Q
    ||||||||| | |||||||| |||| ||||||  || ||| | |  ||||||||||| | |||  ||||  ||||||||||||||| ||  |||||||||    
T  27836927 gcggcttcaatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaagcaccaattgttag 27837026  T
Q  141 gacttaagcctat 153  Q
    |||||||||||||    
T  27837027 gacttaagcctat 27837039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 14913562 - 14913621
Alignment:
Q  132 aattgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgg 190  Q
    |||||||||||||||||||||||||| ||| |||||| |||| | |||| ||||||||||    
T  14913562 aattgttaggacttaagcctatgaggggagcccaaccgaaaagactagtccattaggtgg 14913621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 31074334 - 31074296
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  31074334 tgttaggacttaagcccatgaggagagcccaacccaaaa 31074296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 3736308 - 3736368
Alignment:
Q  113 aactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    |||||||||||||| ||  |||||||| ||||||| |||||||| |||||  |||||||||    
T  3736308 aactctcaatgaaaacatcaattgttaagacttaaacctatgagaagagtttaacccaaaa 3736368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 37223693 - 37223605
Alignment:
Q  107 tggcacaactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaaaatagttcattaggtgggagagc 196  Q
    |||| ||||||||||||||| ||  ||||||||||||||||||  |||||||||| |||| ||||||| |||| ||||||||||||||||    
T  37223693 tggcccaactctcaatgaaagcaccaattgttaggacttaagcacatgaggagagcccaa-ccaaaaactagtccattaggtgggagagc 37223605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 37223956 - 37223841
Alignment:
Q  133 attgttaggacttaagcctatgaggagagtccaac-ccaaaaaatagttcattaggtgggagagcatcataactttagtactacattgatcacttttatc 231  Q
    |||||||||||||||||| || ||||||| ||||| || || | |||| |||||||||||||||  ||||  ||| |||||  |||||| ||||||||||    
T  37223956 attgttaggacttaagcccataaggagagcccaacgcctaagactagtccattaggtgggagagtctcatggcttaagtacctcattgagcacttttatc 37223857  T
Q  232 ttctcaacgtgagact 247  Q
    | ||||| ||| ||||    
T  37223856 tactcaatgtgggact 37223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 8356210 - 8356251
Alignment:
Q  134 ttgttaggacttaagcctatgaggagagtccaacccaaaaaa 175  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  8356210 ttgttaggacttaagcccatgaggagagcccaacccaaaaaa 8356251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 3958234 - 3958385
Alignment:
Q  22 tggtagcccttttctttctgcggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctcaa 121  Q
    |||||||||||| |||| |||||||||| | || ||||| |||| |||| |  || ||| | |  |||||| |||| | |||  ||||  ||||||||||    
T  3958234 tggtagccctttcctttttgcggcttcattcacatatcagtattcggtgaaacaccttaatccaacctataagtagccctttccgtggtccaactctcaa 3958333  T
Q  122 tgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
     |||| ||  ||||||||||||||||| | |||||||||| |||| ||||||    
T  3958334 cgaaagcaccaattgttaggacttaagtcaatgaggagagcccaatccaaaa 3958385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 2414305 - 2414367
Alignment:
Q  134 ttgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggagag 195  Q
    |||||||||||||| |  ||||||||||| |||||| ||| | ||||||||||||||||||||    
T  2414305 ttgttaggacttaaactcatgaggagagttcaaccccaaatactagttcattaggtgggagag 2414367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 13789497 - 13789559
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggagagc 196  Q
    |||||||||||||||| | |||||||| |||||| |||||| |||| || |||||||||||||    
T  13789497 tgttaggacttaagcccaagaggagagcccaacctaaaaaactagtccaataggtgggagagc 13789559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 25194545 - 25194475
Alignment:
Q  132 aattgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggagagcatcat 201  Q
    ||||||||||| |||| || |||||| ||||| ||||||||| | |||||||||||| |||||||| ||||    
T  25194545 aattgttaggatttaaacccatgaggtgagtctaacccaaaacactagttcattaggggggagagcctcat 25194475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 7741704 - 7741793
Alignment:
Q  113 aactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggagagcatcat 201  Q
    |||||||||||||| ||  ||||||||||| ||||||| |||| || ||| |||||||||| | || | |||||| | ||||||||||||    
T  7741704 aactctcaatgaaagcatcaattgttaggatttaagcccatgaagaaagttcaacccaaaagactaatccattagctaggagagcatcat 7741793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 23072193 - 23072132
Alignment:
Q  112 caactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    ||||||||||||||| || ||||| ||| |||||||||| |||| ||||| | |||||||||    
T  23072193 caactctcaatgaaagcactaattcttacgacttaagcccatgaagagagcctaacccaaaa 23072132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 262242 - 262180
Alignment:
Q  133 attgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggaga 194  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||| || |||||||||||    
T  262242 attgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggaga 262180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 33446207 - 33446001
Alignment:
Q  22 tggtagcccttttctttct-gcggcttcactgacctatcaatatttggtggagtactttagttcttcctataggtagtcattttagtggcacaactctca 120  Q
    ||||||||||||||||| | ||||||||| | |||||||| |||||||| ||| || ||| | |  |||||| |||| | |||  ||||  ||||| |||    
T  33446207 tggtagcccttttctttttggcggcttcattcacctatcagtatttggttgagcaccttaatccagcctatatgtagccctttacgtggtccaactttca 33446108  T
Q  121 atgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggagagcatcataactttagtactacattg 219  Q
    |||||| ||| | |||||| || ||||||  ||| |||||| |||||| |||| | |||||||||| |||| ||| | ||||| ||| ||||| ||||||    
T  33446107 atgaaagcaacatttgttaagatttaagctcatgcggagagcccaacctaaaagactagttcattaagtggaagaacctcatagcttaagtacaacattg 33446008  T
Q  220 atcactt 226  Q
    | |||||    
T  33446007 aacactt 33446001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 21008417 - 21008498
Alignment:
Q  132 aattgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggagagcatcataactttagtac 212  Q
    |||| ||||||||||| || |||||||||| ||||||||||| |  ||| ||||||||||| |||| || |||||| |||||    
T  21008417 aattattaggacttaaacccatgaggagagcccaacccaaaagacaagtccattaggtgggggagcctcgtaacttaagtac 21008498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 34373871 - 34373931
Alignment:
Q  112 caactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||| |||| ||||| |||||    
T  34373871 caactctcaatgaaagcatcaattgttaggacttaagcc-atgagaagagcccaacgcaaaa 34373931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 7407944 - 7407884
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaaaa-tagttcattaggtgggaga 194  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||| || |||||||||||    
T  7407944 tgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggaga 7407884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 3870769 - 3870807
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  3870769 tgttaggacttaagcccatgaggagagcccaacccaaaa 3870807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 15226074 - 15226200
Alignment:
Q  87 cctataggtagtcattttagtggcacaactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcatta 185  Q
    ||||||||||| | |||  ||||  ||||||||||| ||| ||  ||||||||||||||||||| ||||||||||  ||| |||||| |||||| |||||    
T  15226074 cctataggtagccttttccgtggtccaactctcaattaaaacatcaattgttaggacttaagcccatgaggagagctcaatccaaaagaatagtccatta 15226173  T
Q  186 ggtgggagagcatcataactttagtac 212  Q
      ||| ||||| ||||| ||| |||||    
T  15226174 attggcagagcctcatagcttaagtac 15226200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 10567460 - 10567399
Alignment:
Q  134 ttgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggaga 194  Q
    ||||||||||||||||| |||||||||| ||||||||||| | |||| || |||||||||||    
T  10567460 ttgttaggacttaagcccatgaggagagcccaacccaaaagactagtgcaataggtgggaga 10567399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 36976069 - 36976008
Alignment:
Q  112 caactctcaatgaaatcaataattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    ||||| ||||||||| ||| ||||||||||| ||||||| |||||||||| | |||||||||    
T  36976069 caactttcaatgaaagcaaaaattgttaggatttaagcccatgaggagagcctaacccaaaa 36976008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 15173456 - 15173523
Alignment:
Q  135 tgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggagagcatcat 201  Q
    |||||||||||||||| |||||||||| ||||||||||| | |||| ||  |||||||||||| ||||    
T  15173456 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccaaaaggtgggagagcctcat 15173523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 22586964 - 22587049
Alignment:
Q  133 attgttaggacttaagcctatgaggagagtccaacccaaaa-aatagttcattaggtgggagagcatcataactttagtactacat 217  Q
    |||||||||||||||||| ||||| |||| | ||||||||| | |||| || |||||| |||||| ||||  ||| ||||||||||    
T  22586964 attgttaggacttaagcccatgagaagagccaaacccaaaagactagtccaataggtgtgagagcctcatggcttaagtactacat 22587049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 12723 - 12682
Alignment:
Q  132 aattgttaggacttaagcctatgaggagagtccaacccaaaa 173  Q
    |||||||||||| |||||| |||||||||| |||||||||||    
T  12723 aattgttaggacctaagcccatgaggagagcccaacccaaaa 12682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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