View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10942_high_9 (Length: 448)
Name: NF10942_high_9
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Complemental strand, 2759681 - 2759272
Alignment:
| Q |
15 |
tcaaccactatattagtaagcacgttcgtacgataaactatatatctaaaccacgacgtgcacacgttattatttaatcatctaattcgtgcttgcatga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759681 |
tcaaccactatattagtaagcacgttcgtacgataaac-------------cacgacgtgcacacgttattatttaatcatctaattcgtgcttgcatga |
2759595 |
T |
|
| Q |
115 |
taagtattggtgataaaataatgcataattttttctctactagaaaaaccacaaggtatcctaattcctaacattattctcatcacaaaaatggcagtgt |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2759594 |
taagtattggtgacaaaataatgcataattttttctctactagaaaaaccacaaggtatcctaattcctaacattattctcatcacaataatggcagtgt |
2759495 |
T |
|
| Q |
215 |
ctttatccaaaaaacggtccaaattttcaagaaaattagaacccaaacaatcttgttttgccttcacaattctatacagcttcatacgtagaatttctgc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759494 |
ctttatccaaaaaacggtccaaattttcaagaaaattagaacccaaacaatcttgttttgccttcacaattctatacagcttcatacgtagaatttctgc |
2759395 |
T |
|
| Q |
315 |
tttaatctttcttttaatccttatatacatgtggtcttctttctccacaattataacaggaaacatcattcatgtttgtttttctacaagaaagctcaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759394 |
tttaatctttcttttaatccttatatacatttggtcttctttctccacaattataacaggaaacatcattcatgtttgtttttctacaagaaagctcaat |
2759295 |
T |
|
| Q |
415 |
gataacttctattgtgtctctgc |
437 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
2759294 |
gataacttctattgtgtttctgc |
2759272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 302 - 429
Target Start/End: Complemental strand, 2755446 - 2755319
Alignment:
| Q |
302 |
gtagaatttctgctttaatctttcttttaatccttatatacatgtggtcttctttctccacaattataacaggaaacatcattcatgtttgtttttctac |
401 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
2755446 |
gtagaatttcggctttaatctttcttttattcctaatctacatgtggtcttctttatccactattataacagtcaacaccattcatgtttgttgttctac |
2755347 |
T |
|
| Q |
402 |
aagaaagctcaatgataacttctattgt |
429 |
Q |
| |
|
||||||| ||| | ||| ||| |||||| |
|
|
| T |
2755346 |
aagaaagttcagtaatagcttttattgt |
2755319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University