View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10942_low_13 (Length: 375)

Name: NF10942_low_13
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10942_low_13
NF10942_low_13
[»] chr4 (6 HSPs)
chr4 (19-289)||(30775954-30776221)
chr4 (58-170)||(9323101-9323213)
chr4 (58-170)||(9377580-9377692)
chr4 (58-170)||(9335073-9335184)
chr4 (20-155)||(35133422-35133557)
chr4 (304-337)||(30775923-30775956)
[»] chr2 (8 HSPs)
chr2 (19-164)||(16661064-16661209)
chr2 (20-155)||(12000301-12000436)
chr2 (20-155)||(7543245-7543380)
chr2 (22-157)||(12244404-12244539)
chr2 (58-114)||(16656637-16656693)
chr2 (20-154)||(14705432-14705566)
chr2 (61-154)||(12257954-12258047)
chr2 (20-164)||(12235758-12235901)
[»] chr7 (19 HSPs)
chr7 (19-184)||(8584534-8584699)
chr7 (19-183)||(8630168-8630332)
chr7 (19-157)||(3148337-3148475)
chr7 (35-161)||(1302273-1302399)
chr7 (19-156)||(6790377-6790514)
chr7 (19-164)||(8647660-8647805)
chr7 (58-164)||(8660203-8660309)
chr7 (19-170)||(8668418-8668569)
chr7 (19-154)||(10492999-10493134)
chr7 (58-159)||(27829382-27829483)
chr7 (58-155)||(8591366-8591463)
chr7 (19-164)||(8655308-8655453)
chr7 (58-114)||(8104074-8104130)
chr7 (19-155)||(17261360-17261496)
chr7 (19-110)||(7876832-7876923)
chr7 (64-135)||(8016336-8016407)
chr7 (61-110)||(8602747-8602796)
chr7 (54-123)||(8635532-8635601)
chr7 (61-113)||(8610674-8610726)
[»] chr1 (3 HSPs)
chr1 (44-172)||(4677563-4677691)
chr1 (57-155)||(34465284-34465382)
chr1 (19-114)||(15596068-15596163)
[»] chr5 (2 HSPs)
chr5 (19-162)||(42554185-42554328)
chr5 (22-164)||(28220906-28221048)
[»] chr8 (1 HSPs)
chr8 (19-154)||(43745793-43745925)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 30776221 - 30775954
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30776221 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 30776122  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttctattgctattcttcaagcttttaaattgtgaataagctattaattgtggttgctttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  30776121 aggctgctatcaaccctcaaaacactgtctttggtaaatttctattgctattctccaagcttttaaattgtcaataagctattaattgtggttgctttgt 30776022  T
Q  219 gattctttattatattgcggaaaatcacagtcaaatgcggctgttgttgcggcttcaactaaagttacatt 289  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30776021 gattct---ttatattgcggaaaatcacagtcaaatgcggctgttgttgcggcttcaactaaagttacatt 30775954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 9323101 - 9323213
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaaat 157  Q
    ||||||||||||||||||||||   |||  ||||||||| | |||| |||||||||| | ||  ||||||  |||||| |||||||| ||||||||||||    
T  9323101 acaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaat 9323200  T
Q  158 ttctattgctatt 170  Q
    ||||||| |||||    
T  9323201 ttctatttctatt 9323213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 9377580 - 9377692
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaaat 157  Q
    ||||||||||||||||||||||   |||  ||||||||| | |||| |||||||||| | ||  ||||||  |||||| |||||||| ||||||||||||    
T  9377580 acaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaat 9377679  T
Q  158 ttctattgctatt 170  Q
    ||||||| |||||    
T  9377680 ttctatttctatt 9377692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 9335073 - 9335184
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaaat 157  Q
    ||||||||||||||||||||||   |||  ||||||||| | |||| |||||||||| | ||  ||||||  |||||| |||||||| ||||||||||||    
T  9335073 acaccttcttttgttgctttcaacaatgagcaaaggttgat-ggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaat 9335171  T
Q  158 ttctattgctatt 170  Q
    ||||||| |||||    
T  9335172 ttctatttctatt 9335184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 35133557 - 35133422
Alignment:
Q  20 gagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacca 119  Q
    |||| ||||| || ||||||||| || ||| |||||  |||||||||| | ||||||||||| | | |||||||||| |||||| |||||||||| | ||    
T  35133557 gagtcgaaatcattcacaacgatcaaagcaacaaaacaacaccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatca 35133458  T
Q  120 ggctgctatcaaccctcaaaacactgtctttggtaa 155  Q
     ||||||  |||   | |||||||||| ||||||||    
T  35133457 agctgctgccaattttgaaaacactgtatttggtaa 35133422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 30775956 - 30775923
Alignment:
Q  304 attagacaaccaaacgtcctaacttagattacca 337  Q
    ||||||||||||||||||||||||||||||||||    
T  30775956 attagacaaccaaacgtcctaacttagattacca 30775923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 16661064 - 16661209
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |    
T  16661064 agagttgagattatccacaacgatgaaggcaacaaaattacaccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgctgctaaggatc 16661163  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttctatt 164  Q
    | |||||||||||||| |||||||| ||||||| || |||||||||    
T  16661164 aagctgctatcaacccacaaaacaccgtctttgctatatttctatt 16661209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 12000436 - 12000301
Alignment:
Q  20 gagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacca 119  Q
    |||||||||| || ||||||||| |||||| |||||| |||||||||| |||||||||||||||   ||||||||| || |||| |||||||||  ||||    
T  12000436 gagttgaaatcattcacaacgatcaaggcaacaaaataacaccttcttgtgttgctttcactgaaaatcaaaggtttgttggtgatgctgctaaaaacca 12000337  T
Q  120 ggctgctatcaaccctcaaaacactgtctttggtaa 155  Q
     || |||  |||| ||||||||||||| ||||||||    
T  12000336 agccgctgccaactctcaaaacactgtttttggtaa 12000301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 7543380 - 7543245
Alignment:
Q  20 gagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacca 119  Q
    |||||||||| || ||||||||  |||||| || ||  ||||||||||||||||||||||| ||   ||| |||||| |||||| |  ||||||| | ||    
T  7543380 gagttgaaatcattcacaacgaccaaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatca 7543281  T
Q  120 ggctgctatcaaccctcaaaacactgtctttggtaa 155  Q
     ||||||  |||||||||||||||||||||||||||    
T  7543280 agctgcttccaaccctcaaaacactgtctttggtaa 7543245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 12244404 - 12244539
Alignment:
Q  22 gttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccagg 121  Q
    |||||||| || ||||||||| | |||| || ||  |||||||||| ||||||||||||||| | |||||||||  | |||| |||||||||  | || |    
T  12244404 gttgaaatcattcacaacgatcagggcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaag 12244503  T
Q  122 ctgctatcaaccctcaaaacactgtctttggtaaat 157  Q
    |||||   ||| ||||||||||||||||||||||||    
T  12244504 ctgctgctaactctcaaaacactgtctttggtaaat 12244539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 16656637 - 16656693
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaag 114  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||||    
T  16656637 acaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaag 16656693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 14705566 - 14705432
Alignment:
Q  20 gagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacca 119  Q
    |||||||||| || ||||||||| ||||||  | ||  || |||||||||||||||||||| ||   |||  ||||| | |||| |||||||||| | ||    
T  14705566 gagttgaaatcattcacaacgatcaaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatca 14705467  T
Q  120 ggctgctatcaaccctcaaaacactgtctttggta 154  Q
     ||||||  |||||||| |||||||||||||||||    
T  14705466 agctgctgccaaccctcgaaacactgtctttggta 14705432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 12257954 - 12258047
Alignment:
Q  61 ccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggta 154  Q
    ||||||| ||||||||| ||| | | |||||||||| | |||| |||||||||| | || ||||||  |||||||||| |||||||||||||||    
T  12257954 ccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagctgctgccaaccctcaacacactgtctttggta 12258047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 12235901 - 12235758
Alignment:
Q  20 gagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacca 119  Q
    ||||||| || || ||||||||| ||||||  | ||  || |||||||||||||||||||| ||   ||| |||||| | |||| |||||||||| | ||    
T  12235901 gagttgagatcattcacaacgatcaaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatca 12235802  T
Q  120 ggctgctatcaaccctcaaaacactgtctttggtaaatttctatt 164  Q
     ||||||  |||||| |||||||| ||||||||| ||||||||||    
T  12235801 agctgcttccaacccgcaaaacaccgtctttggt-aatttctatt 12235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 8584534 - 8584699
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||||| ||||||||||| || |||| |||||||||||| |||| |||||||||||| |    
T  8584534 agagttgagattattcacaacgatgaaggcaataaaatcacaccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatc 8584633  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttctattgctattcttcaagcttttaa 184  Q
    ||||||||||||||||  | |||||||||||||||| ||||||||  ||||| | ||| |||||||    
T  8584634 aggctgctatcaacccagagaacactgtctttggtatatttctatctctattttccaatcttttaa 8584699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 8630332 - 8630168
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||||||||||  |||||||||||||| || |||||||| || |||| |||||||||||| |||| |||||||||||| |    
T  8630332 agagttgagattattcacaatgatgaaggcaataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatc 8630233  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttctattgctattcttcaagctttta 183  Q
    ||||||| |||||||| ||||||||||||||||||| |||||||   ||||||| ||| ||||||    
T  8630232 aggctgccatcaacccacaaaacactgtctttggtatatttctaaacctattctgcaaactttta 8630168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 3148475 - 3148337
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||  |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| | |    
T  3148475 agagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaagaatc 3148376  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaat 157  Q
    | ||| | |  |||||| |||||||||| ||||||||||    
T  3148375 aagctcccacaaaccctgaaaacactgtttttggtaaat 3148337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 1302399 - 1302273
Alignment:
Q  35 acaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccc 134  Q
    |||||||  |||||| |||||  ||||| ||||||||||||||||| |||| |||||||||| |||||| |||||||||| | |||||||| | ||| ||    
T  1302399 acaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaagaatcaggctgcaaccaatcc 1302300  T
Q  135 tcaaaacactgtctttggtaaatttct 161  Q
    | |||| ||||| ||||||||||||||    
T  1302299 tgaaaatactgtttttggtaaatttct 1302273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 6790514 - 6790377
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||  |||| | ||||| |||||||||||||||||||||||| ||||  ||||||||| |||||| |||||||||| | |    
T  6790514 agagttgagattattcacaatgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgctgctaagtatc 6790415  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaa 156  Q
    | ||||| | |||||| ||||||||| |||| ||||||    
T  6790414 aagctgccaccaacccgcaaaacactatcttcggtaaa 6790377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 8647805 - 8647660
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||| |||| | || ||  ||||||||||||||||||||||| |||| |||||||||| | |||| ||| |||||  | |    
T  8647805 agagttgagattattcacaatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatc 8647706  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttctatt 164  Q
    ||||||||   ||||||   ||||||||||||||||||||||||||    
T  8647705 aggctgcttctaaccctaccaacactgtctttggtaaatttctatt 8647660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 8660309 - 8660203
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaaat 157  Q
    |||||||| ||||||||||||||||| | |||||||||| | |||| |||||||||| | |||||||| | ||| |||  ||||||||| |||||| |||    
T  8660309 acaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaagaatcaggctgcaaccaatcctgtaaacactgtttttggttaat 8660210  T
Q  158 ttctatt 164  Q
    |||||||    
T  8660209 ttctatt 8660203  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 8668569 - 8668418
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||| |||| | |  ||| ||||||||||||||||||||||   |||  ||||||||| | || | |||||||||| | |    
T  8668569 agagttgagattattcacaatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgctaagaatc 8668470  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttctattgctatt 170  Q
    |  ||||||  |||||| |||||||| ||||||||||||||||||| |||||    
T  8668469 aatctgctactaaccctgaaaacactatctttggtaaatttctatttctatt 8668418  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 10492999 - 10493134
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||||||||| ||||| ||| |||| |  | ||  ||||||||||||||||||||||   ||| |||||||||| |||||| |||||||||| | |    
T  10492999 agagttgaaattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaagaatc 10493098  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggta 154  Q
    |  |||| |  |||||| ||||||| ||||||||||    
T  10493099 aatctgccactaaccctgaaaacaccgtctttggta 10493134  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 27829382 - 27829483
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaaat 157  Q
    |||||||||| |||||||||||| ||    || |||||| | |||| |||||||||| |||| ||||||  |||||||||||||||| ||||||||| ||    
T  27829382 acaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgctgctaagaaccaagctgcttccaaccctcaaaacactatctttggtatat 27829481  T
Q  158 tt 159  Q
    ||    
T  27829482 tt 27829483  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 8591463 - 8591366
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaa 155  Q
    |||||||||||||||||||| ||| ||| |||||||||| | |||| |||||| ||  |||||||||||   |||||   |||||||||||| |||||    
T  8591463 acaccttcttttgttgcttttactaatgatcaaaggttgattggtgatgctgcaaaaaaccaggctgcttctaacccagcaaacactgtcttcggtaa 8591366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 8655453 - 8655308
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||| ||||||  | ||  ||||||||| |||||||||||||||||  |||||||||| | ||   ||  ||| || | |    
T  8655453 agagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatc 8655354  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttctatt 164  Q
    |  |||||| ||||||  |||||||||| |||||||||||||||||    
T  8655353 aatctgctaccaaccccgaaaacactgtatttggtaaatttctatt 8655308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 8104130 - 8104074
Alignment:
Q  58 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaag 114  Q
    ||||| |||| |||||||||||||||| || |||||||| |||||| ||||||||||    
T  8104130 acaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaag 8104074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 17261496 - 17261360
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| || || ||||| ||| |||| | |||||| || |||||||||||||||||  || | | | |||||||| |||||| ||| |||||| | |    
T  17261496 agagttgagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatc 17261397  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaa 155  Q
    | ||||| || |||||  ||||||| |||||||||||    
T  17261396 aagctgccataaacccagaaaacaccgtctttggtaa 17261360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 7876832 - 7876923
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgc 110  Q
    ||||| |||||||| ||||| ||  |||||| || ||  |||||||||||||||||||||||  ||| |||||||||| | |||| ||||||    
T  7876832 agagtcgaaattattcacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgc 7876923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 8016336 - 8016407
Alignment:
Q  64 tcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccct 135  Q
    |||| |||||||||||||||| || |||||||| |||||| |||||||||| | |||| ||| || ||||||    
T  8016336 tcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcaggttgcgatgaaccct 8016407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 8602796 - 8602747
Alignment:
Q  61 ccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgc 110  Q
    ||||||||||||||||| ||||||| | |||||||| |||||| ||||||    
T  8602796 ccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgc 8602747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 8635532 - 8635601
Alignment:
Q  54 aatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggct 123  Q
    |||||||||||||| ||||||||||||||| |  ||||||||| | |||| |||||| ||  ||||||||    
T  8635532 aatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgccaaaaaccaggct 8635601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 8610726 - 8610674
Alignment:
Q  61 ccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaa 113  Q
    |||||||||||||||||| ||| || |||||||||| | |||| |||||||||    
T  8610726 ccttcttttgttgctttctctggtgatcaaaggttgataggtgatgctgctaa 8610674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 4677563 - 4677691
Alignment:
Q  44 aaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacac 143  Q
    |||||| |||||  |||||||||||||||||||| ||||||| |||||||||| | |||  |||||||||| | ||  |||| | |||| || |||||||    
T  4677563 aaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaacac 4677662  T
Q  144 tgtctttggtaaatttctattgctattct 172  Q
    ||||||||||||||||||||| |||||||    
T  4677663 tgtctttggtaaatttctatttctattct 4677691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 34465284 - 34465382
Alignment:
Q  57 cacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaa 155  Q
    ||||||||||||||||||||| ||| ||| |||||| ||| |||||  |||||||||| | ||  |||||| |||||| || |||||||| ||||||||    
T  34465284 cacaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatcaaactgctaccaacccacagaacactgtttttggtaa 34465382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 15596163 - 15596068
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaag 114  Q
    ||||| || ||||||||||| ||  |||| | || ||| ||||||||||||||| |||||||| ||| |||||||||| | |||| ||||||||||    
T  15596163 agagtcgagattatccacaatgaccaaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgctaag 15596068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 42554185 - 42554328
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||| |||||| |||||  |||||||||||||||||||| ||| ||  | |||||||| | |||| |||||||||||| |    
T  42554185 agagttgagattattcacaatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaaggatc 42554284  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggtaaatttcta 162  Q
    |  | || | |||||| ||||||||||||||||||| |||||||    
T  42554285 aaaccgccaccaacccccaaaacactgtctttggtacatttcta 42554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 28221048 - 28220906
Alignment:
Q  22 gttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccagg 121  Q
    ||||| ||||| ||||| ||| |||||| |||||  || |||||||||||||||||||| |||| | |||||||| | || | |||||||||  | ||      
T  28221048 gttgagattattcacaatgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaatcaaa 28220949  T
Q  122 ctgctatcaaccctcaaaacactgtctttggtaaatttctatt 164  Q
    | || | |||||| ||||| || ||||||||||||||||||||    
T  28220948 cggccaacaacccccaaaataccgtctttggtaaatttctatt 28220906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 43745925 - 43745793
Alignment:
Q  19 agagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggacc 118  Q
    |||||||| ||||| ||||| ||| |||||| |||||   || |||||||||||||||| ||||||  | |||||||| | ||||  ||||||||| | |    
T  43745925 agagttgagattattcacaatgatcaaggcaacaaaa---caacttcttttgttgcttttactgatcatgaaaggttgataggtgacgctgctaagaatc 43745829  T
Q  119 aggctgctatcaaccctcaaaacactgtctttggta 154  Q
    |  | || | |||||||||||||||  |||||||||    
T  43745828 aaaccgccaccaaccctcaaaacaccatctttggta 43745793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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