View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_14 (Length: 374)
Name: NF10942_low_14
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 53500151 - 53499784
Alignment:
| Q |
1 |
cttaaagttctgcacattttctttttgaatggatactcgtcttgtgaactagtcttggatgttgtttttatattggaacttgttcatagtcccattttgg |
100 |
Q |
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| T |
53500151 |
cttaaagttctgcacattttctttttgaatggatactcgtcttgtgaactagtcttggatgttgtttttatattgaaacttgttcatagtcccattttgg |
53500052 |
T |
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| Q |
101 |
gtgcttatacaaattttgattgcaggggtcgtgagtttctttggcaagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattcca |
200 |
Q |
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| T |
53500051 |
gtgcttatacaaattttgattgcaggagtcgtgagtttctttggcaagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattcca |
53499952 |
T |
|
| Q |
201 |
tcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaattgagtctttgtgaacaatttcctttgtaatttgatattttaaaaa |
300 |
Q |
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| T |
53499951 |
tcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaa-tgagtctttgtgaacaatttcctttgtaatttgatattttaaaaa |
53499853 |
T |
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| Q |
301 |
atcatttttagtcaccaccttgtggttttatttaacttaaattagttatggacttccttctctgcttct |
369 |
Q |
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| T |
53499852 |
atcatttttagtcaccaccttgtggttttatttaacttaaattagttatggacttccttttttgcttct |
53499784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 67 - 255
Target Start/End: Complemental strand, 53492087 - 53491898
Alignment:
| Q |
67 |
tttatattggaacttgttcatagtcccatttt-gggtgcttatacaaattttgattgcaggggtcgtgagtttctttggcaagaaggtcacggtgctttt |
165 |
Q |
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| T |
53492087 |
tttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgctttt |
53491988 |
T |
|
| Q |
166 |
gcaacagaggatgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaat |
255 |
Q |
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| T |
53491987 |
gcaacagaggatgaagcacatgcagaggtattccgtcaagtagttattttaggaatctgccttaatatatgcatctttggcatctgtaat |
53491898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 109 - 246
Target Start/End: Complemental strand, 16071268 - 16071131
Alignment:
| Q |
109 |
acaaattttgattgcaggggtcgtgagtttctttggcaagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattccatcaagtag |
208 |
Q |
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| T |
16071268 |
acaaattttgattgcaggagtcgtgagtttctttggcaagaaggacacagtgcttttgcttctgaggaagaagcagatgcagaggtattccatcaagtag |
16071169 |
T |
|
| Q |
209 |
ttattttaggaatctgccttactatatgcatttttggc |
246 |
Q |
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| T |
16071168 |
ttgttttaggaatttgccttaatatttgcatatttggc |
16071131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 45354243 - 45354365
Alignment:
| Q |
99 |
gggtgcttatacaaattttgattgcaggggtcgtgagtttctttggcaagaaggtcacggtgcttttgcaacagaggatgaagcacatgcagaggtattc |
198 |
Q |
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|||| ||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||| || ||||||||||| |
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| T |
45354243 |
gggtacttataccaattttaattgcaggagtcgtgagtttctttggcaagaaggacacactgcttttgcaacaaaggaggaagcagatacagaggtattc |
45354342 |
T |
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| Q |
199 |
catcaagtagttattttaggaat |
221 |
Q |
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|||||| ||||||||| |||||| |
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| T |
45354343 |
catcaaatagttatttcaggaat |
45354365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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