View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_2 (Length: 695)
Name: NF10942_low_2
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 20 - 687
Target Start/End: Original strand, 30768211 - 30768878
Alignment:
| Q |
20 |
gagtttgcaactacattctgaacttcttctagaggtttcagagtttgattttcgccgattggatgccatggaggaagctccgcgagcttgtcaatggaag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768211 |
gagtttgcaactacattctgaacttcttctagaggtttcagagtttgattttcgctgattggatgccatggaggaagctccgcgagcttgtcaatggaag |
30768310 |
T |
|
| Q |
120 |
actttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768311 |
actttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagag |
30768410 |
T |
|
| Q |
220 |
tcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctacttgaact |
319 |
Q |
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| T |
30768411 |
tcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctccttctacttgaact |
30768510 |
T |
|
| Q |
320 |
atctctcctccagtactcctcatccctagttctcaccttctctatgctttctatggaaagttgtttctatttggtggggttggttttgggcttattgatg |
419 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768511 |
atctctcctccagtactcctcatccctagttcccaccttctctatgctttctatgaaaagttgtttctatttggtggggttggttttgggcttattgatg |
30768610 |
T |
|
| Q |
420 |
aggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgta |
519 |
Q |
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| T |
30768611 |
aggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgta |
30768710 |
T |
|
| Q |
520 |
acgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttgaaatcctacttctttttaggacaaaagttacgaattgttt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||| |
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| T |
30768711 |
acgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttgaagtcctacttctttttaggacaaaagttatgtatttttt |
30768810 |
T |
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| Q |
620 |
taaaggtgttgactatgctactcattaattataataggtgtcgctctggctttaaatggatctctgct |
687 |
Q |
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| T |
30768811 |
taaaggtgttgactatgctactcattaattataataggtgtcgctctggctttaaatggatatctgct |
30768878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 77 - 330
Target Start/End: Original strand, 39077242 - 39077495
Alignment:
| Q |
77 |
attggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggc |
176 |
Q |
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||||||| |||||| ||||||| | || |||||||||| |||||| || || ||||| |||||||| || ||||| || ||||||||||||||||| | |
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| T |
39077242 |
attggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagac |
39077341 |
T |
|
| Q |
177 |
gatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
276 |
Q |
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| T |
39077342 |
ggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttt |
39077441 |
T |
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| Q |
277 |
tttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctcc |
330 |
Q |
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| T |
39077442 |
tctacctgtcgcccttacaatgtggcctccttgaacttgaactatttctcctcc |
39077495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 276
Target Start/End: Complemental strand, 22328097 - 22327946
Alignment:
| Q |
125 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaa |
224 |
Q |
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||||| || ||||||||||| |||||||| ||||| | |||||||||||| |||||||| || |||||||||| || || ||||| ||||||||||| | |
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| T |
22328097 |
gcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgta |
22327998 |
T |
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| Q |
225 |
ccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
276 |
Q |
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| T |
22327997 |
cacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtcttt |
22327946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 479 - 529
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
479 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
529 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||| |||||||| |
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| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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