View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_22 (Length: 291)
Name: NF10942_low_22
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 36222866 - 36223142
Alignment:
| Q |
1 |
attaatacacttgagtttatagaatctattagacagtggtatttaactaggattcagattctctgccacgatgcagcggtgcaacaatttctttttcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
36222866 |
attaatacacttgagtttatagaatctattagacagtggtatttaactaggattcagattctctcccacgatgcagcggtgcaacaatttctttttcatg |
36222965 |
T |
|
| Q |
101 |
ttaaaaaggactaccacgtgaagtggtatgttgtcctagttnnnnnnntatcgcagcgttgcatcatggaagtggatacgaatccatttagatatacttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36222966 |
ttaaaaaggactaccacgtgaagtggtatgttgtcctagttaaaaaaatatcgcagcgttgcatcatggaagtggatacgaatccatttagatatacttt |
36223065 |
T |
|
| Q |
201 |
ttacttttctacctttacaatgatttccctcattgattcaaatagtatttgcaatccaagagttgccatgacagaag |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223066 |
ttacttttctacctttacaatgatttccctcattgattcaaatagtatttgcaatccaagagttgccatgacagaag |
36223142 |
T |
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