View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_23 (Length: 287)
Name: NF10942_low_23
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_23 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 21076391 - 21076128
Alignment:
| Q |
16 |
aacacaacccagcaagcccaacgtgggacccgaaaccaagattgcaaaataaagagatgtgtaaaaagccacaatcattgatgaaccaaagtaaccagag |
115 |
Q |
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|||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21076391 |
aacacaacccagcaagcccagcgtgggacccaaaactaggattgcaaaataaagagatgtgtaaaaagccacgatcattgatgaaccaaagtaaccagag |
21076292 |
T |
|
| Q |
116 |
acacacctgattataatgaaacccgataatggtgtatgaatcgactgtaa--acataaagattcaagaaccaatagcccctgcaacaaaagcatccgctt |
213 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
21076291 |
acacgcctgattataatgaaacccgagaatggtgtatgaatcgactataaacacataaagattcaagaaccaatagcccctgcaactaaagcatcagctt |
21076192 |
T |
|
| Q |
214 |
tactgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatcccaacctttg |
277 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21076191 |
taccgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatcccaacctttg |
21076128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 21022139 - 21021876
Alignment:
| Q |
16 |
aacacaacccagcaagcccaacgtgggacccgaaaccaagattgcaaaataaagagatgtgtaaaaagccacaatcattgatgaaccaaagtaaccagag |
115 |
Q |
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|||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |
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| T |
21022139 |
aacacaacccagcaagcccaacccaggacctgaaaccaggattgcaaaataaagagatgtgcaaaaagccgcaatcattgaagaaccaaagtaaccagag |
21022040 |
T |
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| Q |
116 |
acacacctgattataatgaaacccgataatggtgtatgaatcgactg--taaacataaagattcaagaaccaatagcccctgcaacaaaagcatccgctt |
213 |
Q |
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||||||||||||||||| ||||| || |||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
21022039 |
acacacctgattataataaaacctgagaatggtgtatgattcgactgccgacacataaagatttaagaaccaatagcccctgcaacaaaagcatcagctt |
21021940 |
T |
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| Q |
214 |
tactgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatcccaacctttg |
277 |
Q |
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||| ||||||| |||||||| |||||| |||||||| || |||||||| |||||||| ||||| |
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| T |
21021939 |
taccgacccttcggagtccaacccaagcgagaaatattgttattaaacctgatcccaagctttg |
21021876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 135 - 277
Target Start/End: Complemental strand, 5474166 - 5474022
Alignment:
| Q |
135 |
aacccgataatggtgtatgaatcgactgtaaacat--aaagattcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtcc |
232 |
Q |
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||||||| |||||||||||||| |||||| |||| | ||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
5474166 |
aacccgagaatggtgtatgaattgactgttaacaccgagagattcaagaaccaaaagcccctgcaacaaaagcaacagctttaccgaccctttcgagtct |
5474067 |
T |
|
| Q |
233 |
aaaccaagcaagaaatatcgtcattaaacccgatcccaacctttg |
277 |
Q |
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||||||||||||||||||| |||||||| |||||||||| ||||| |
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| T |
5474066 |
aaaccaagcaagaaatatcttcattaaaaccgatcccaagctttg |
5474022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 277
Target Start/End: Original strand, 13167611 - 13167738
Alignment:
| Q |
152 |
tgaatcgactgtaaacataaaga--ttcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtccaaaccaagcaagaaata |
249 |
Q |
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|||||||||||| |||| | ||| ||||||||| || ||||| ||||||||||||| | ||||||| || ||||| ||||||||||||||||||||||| |
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| T |
13167611 |
tgaatcgactgtcaacacagagaaattcaagaacgaaaagcccttgcaacaaaagcagcagctttaccgatccttttgagtccaaaccaagcaagaaata |
13167710 |
T |
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| Q |
250 |
tcgtcattaaacccgatcccaacctttg |
277 |
Q |
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|| |||||||| || |||| || ||||| |
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| T |
13167711 |
tcatcattaaaaccaatccgaatctttg |
13167738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 50415 - 50511
Alignment:
| Q |
16 |
aacacaacccagcaagcccaacgtgggacccgaaaccaagattgcaaaataaagagatgtgtaaaaagccacaatcattgatgaaccaaagtaacca |
112 |
Q |
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|||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
50415 |
aacacaactcagcaagcccaacgtgggacccaaaaccgagattgcaaaataaagagatgtgtaaaaagccgcaaccattgatcaaccaaagtaacca |
50511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 50544 - 50643
Alignment:
| Q |
170 |
aaagattcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtccaaaccaagcaagaaatatcgtcattaaacccgatccc |
269 |
Q |
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||||| ||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||| |
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| T |
50544 |
aaagaatcaagaacctatagcccctacaacaaaagcaacaactttactgaccctttcgagtccaaaccaagccaaaaatatcttcattaaaaccgatccc |
50643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 22310620 - 22310763
Alignment:
| Q |
136 |
acccgataatggtgtatgaatcgactgtaaacataaaga--ttcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtcca |
233 |
Q |
| |
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|||||| ||||||||||||||||||||| |||| | ||| |||||||||||| | |||||||||| |||||| | ||| ||||||| |||||||||||| |
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| T |
22310620 |
acccgagaatggtgtatgaatcgactgtcaacacagagagattcaagaaccaaaatcccctgcaacgaaagcagcagctatactgacgctttcgagtcca |
22310719 |
T |
|
| Q |
234 |
aaccaagcaagaaatatcgtcattaaacccgatcccaacctttg |
277 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||| ||||| |
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| T |
22310720 |
aaccaagcaagaaatatcttcattaaaactgatcccaagctttg |
22310763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 277
Target Start/End: Original strand, 8777096 - 8777237
Alignment:
| Q |
138 |
ccgataatggtgtatgaatcgactgtaaacataaaga--ttcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtccaaa |
235 |
Q |
| |
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|||| |||||| |||||||||||||| |||| | ||| |||||||||||| |||||||||||| |||||||| ||| ||| |||||||||||||||||| |
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|
| T |
8777096 |
ccgagaatggtctatgaatcgactgtcaacacagagagattcaagaaccaaaagcccctgcaacgaaagcatcagctataccgaccctttcgagtccaaa |
8777195 |
T |
|
| Q |
236 |
ccaagcaagaaatatcgtcattaaacccgatcccaacctttg |
277 |
Q |
| |
|
|||||||||||||||| ||| |||| | |||||||| ||||| |
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| T |
8777196 |
ccaagcaagaaatatcttcagtaaaactgatcccaaactttg |
8777237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 135 - 277
Target Start/End: Original strand, 1345559 - 1345703
Alignment:
| Q |
135 |
aacccgataatggtgtatgaatcgactgtaaacataaag--attcaagaaccaatagcccctgcaacaaaagcatccgctttactgaccctttcgagtcc |
232 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| |||| | | ||||||||| | | ||||| || |||||||| ||| |
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|
| T |
1345559 |
aacccgagaatggtgtatgaatcgactgtcaacacaaagtgattcaagaaccaaaagcctcgaccacaaaagcagcagttttaccgatcctttcgactcc |
1345658 |
T |
|
| Q |
233 |
aaaccaagcaagaaatatcgtcattaaacccgatcccaacctttg |
277 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| ||||| |
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|
| T |
1345659 |
aaaccaagcaagaaatatcttcattaaaatcgatcccaagctttg |
1345703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 28385420 - 28385540
Alignment:
| Q |
16 |
aacacaacccagcaagcccaacgtgggacccgaaaccaagattgcaaaataaagagatgtgtaaaaagccacaatcattgatgaaccaaagtaaccagag |
115 |
Q |
| |
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|||||||||||||| |||||| | ||| | |||||| ||||||||| |||| | ||||||||||| |||||||||| || ||||||||| ||| |
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|
| T |
28385420 |
aacacaacccagcagatccaacgcgagactcaaaacca-gattgcaaagtaaaatggtgtgtaaaaagttgcaatcattgacgatccaaagtaattagat |
28385518 |
T |
|
| Q |
116 |
acacacctgattataatgaaac |
137 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
28385519 |
acacacttgattataatgaaac |
28385540 |
T |
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Back To:
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