View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_24 (Length: 273)
Name: NF10942_low_24
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 53500379 - 53500149
Alignment:
| Q |
19 |
gataaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccgttcatcaggtac-nnnnn |
117 |
Q |
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| T |
53500379 |
gataaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccgttcatcaggtactttttt |
53500280 |
T |
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| Q |
118 |
nnnnaccatcttttcctttttccatgttataacaatgcgttggttgatataacataacaaaactttcaagctttaaataaaaggcttaaaaaattctaaa |
217 |
Q |
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| T |
53500279 |
ttttaccatcttttcctttttccatgttataatgatgtgttggttgatgtaacgtaacaaaactttcaagct-------------ttaaaaaattctaaa |
53500193 |
T |
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| Q |
218 |
aattgatattatgcgttgtagttttatgtcttacataatgcctt |
261 |
Q |
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| T |
53500192 |
aattgatattatgcgttgtagttttatgtcttacataatgcctt |
53500149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 53492459 - 53492215
Alignment:
| Q |
19 |
gataaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccgttcatcaggtacnnnnnn |
118 |
Q |
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| T |
53492459 |
gataaggggacatcgtgacttgcctttgaaactcaatcaatggtgcaatgttgttagatgggtggtcggagatcccacaccattcatcaggtactttctt |
53492360 |
T |
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| Q |
119 |
nnn-accatcttttcctttttccatgttataacaatgcgttggttgatataacataac-aaaactttcaagctttaaataaaaggcttaaaaaattctaa |
216 |
Q |
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| T |
53492359 |
ttttaccatcttttcctttttccatgttataacaatgtgttggctgctgtaacgtaatgaaaactttcaagctttatataagaggcttaaacaattccaa |
53492260 |
T |
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| Q |
217 |
aaattgatattatgcgttgtagttttatgtcttacataatgcctt |
261 |
Q |
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| T |
53492259 |
aaattgatattatgcattgtagttatatgtcttacataatgcctt |
53492215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 16071574 - 16071484
Alignment:
| Q |
19 |
gataaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccgttcatcagg |
109 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| || |||||| |
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| T |
16071574 |
gataaggggacaccgcgacttgcctttgaaacttaatcaatggtgcaatgcggttagatgggtggttggagatcccataccattaatcagg |
16071484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 45353616 - 45353706
Alignment:
| Q |
19 |
gataaggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccgttcatcagg |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| | || | |||||||||| ||||||||| |
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| T |
45353616 |
gataaggggacatcgtgacttgcctttgaagcttaatcagtggtgcaatgttgttagatgggagttcagcaatcccacaccattcatcagg |
45353706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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