View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_25 (Length: 260)
Name: NF10942_low_25
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 7096762 - 7096554
Alignment:
| Q |
22 |
caaacatgtaacattctttttcagcgatgttcttgcagcatatgcttgttcaatgatgaatgccataaggatttcagtaattattccagttgaaccttta |
121 |
Q |
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| T |
7096762 |
caaacatgtaacattctttttcagcgatgttcttgcagcatatgcttgttcgatgatgaatgccataaggatttcagtaattattccagttgaaccttta |
7096663 |
T |
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| Q |
122 |
tttgaagaatgtgaaaagaggtatgatagtttctaatcaccaaattagtttctaatcaccaaattaatttaaatttctatctgcgtgaatcacttgctta |
221 |
Q |
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| T |
7096662 |
tctgaagaatgtgaaaagaggtatgatagtttctaatcaccaa-------------------attaatttaaatttctatctgcgtgaatcacttgctta |
7096582 |
T |
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| Q |
222 |
atgttaccaataaaaattctttgttcat |
249 |
Q |
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| T |
7096581 |
aggttaccaataaaaattctttgttcat |
7096554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 7584453 - 7584501
Alignment:
| Q |
186 |
taatttaaatttctatctgcgtgaatcacttgcttaatgttaccaataa |
234 |
Q |
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| T |
7584453 |
taatttaaatttctatctgcattaatcacttgcttaatgttaccaataa |
7584501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 32492529 - 32492577
Alignment:
| Q |
18 |
acagcaaacatgtaacattctttttcagcgatgttcttgcagcatatgct |
67 |
Q |
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| T |
32492529 |
acagtaaacatgtaacatcctttt-cagcgatgttcttgcagcatatgct |
32492577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 17980954 - 17980763
Alignment:
| Q |
28 |
tgtaacattctttttcagcgatgttcttgcagcatatgcttgttcaatgatgaatgccataaggatttcagtaattattccagttgaacctttatttgaa |
127 |
Q |
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| T |
17980954 |
tgtaacattctttt-cagcgatgttctcgcagcatatacttgtcacatgatgaatgccccaatgatttcagtaaatactcca-ttgaacctttatttgaa |
17980857 |
T |
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| Q |
128 |
gaatgtgaaaagaggtatgatagtttctaatcaccaaattagtttctaatcaccaaattaatttaaatttctatctgcgtgaatcacttgcttaatgtta |
227 |
Q |
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| T |
17980856 |
gaatgtgagaaaaggtatgatagtttctaatcgccaaataagtttc------------taatttaaatttctatctgcatgaatcacttgcttaatgtta |
17980769 |
T |
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