View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_26 (Length: 256)
Name: NF10942_low_26
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37213155 - 37212916
Alignment:
| Q |
1 |
tctcatttttactcccagtaggaagtaagtgttaaaggaaattttctataatatttagtttagccttgaatagaacatttttggttgtttataacaatgg |
100 |
Q |
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| T |
37213155 |
tctcatttttactcacagtaggaagtaagtgttaaaggaaattttctataatatttagtttagccttgaatagaacatttttggttgtttataacaatgg |
37213056 |
T |
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| Q |
101 |
aaaacctcttcatcaatgtatatgcttaggacttaatgtacaatgacatgtttcctcggtttctctaaaaaatattatctgtcttgttattttaaattta |
200 |
Q |
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| T |
37213055 |
aaaacctcttcatcaatgtatatgcttaggacttaatgtacaatgacatgtttcctcggtttctctaaaaaatattatctgtcttgttattttaaattta |
37212956 |
T |
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| Q |
201 |
acactaacttcaacttgttgccttgtggatatgttcagtc |
240 |
Q |
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| T |
37212955 |
acactaacttcaacttgttgccttgtggatatgttcagtc |
37212916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 37203829 - 37203774
Alignment:
| Q |
74 |
aacatttttggttgtttataacaatggaaaacctcttcatcaatgtatatgcttag |
129 |
Q |
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| T |
37203829 |
aacacttttggttgtttataacaaagcaaaacctctttatcaatgtatatgcttag |
37203774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 37196127 - 37196070
Alignment:
| Q |
69 |
aatagaacatttttggttgtttataacaatggaaaacctcttcatcaatgtatatgct |
126 |
Q |
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| T |
37196127 |
aataaaacacttttggttgtttatagcaaagcaaaacctcttcatcaatgcatatgct |
37196070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 7528755 - 7528662
Alignment:
| Q |
136 |
atgtacaatgacatgtttcctcggtttctctaaaaaatattatctgtc---ttgttattttaaatttaacactaacttcaacttgttgccttgtg |
227 |
Q |
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| T |
7528755 |
atgtacaatgacatgtttcctgagtttctctaaaataaaat-tctgtcttgttgttgttttagatttaatcctaacttcaacttgttgccttgtg |
7528662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 413109 - 413145
Alignment:
| Q |
136 |
atgtacaatgacatgtttcctcggtttctctaaaaaa |
172 |
Q |
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| T |
413109 |
atgtacaatgacatgtttcttaggtttctctaaaaaa |
413145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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