View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_28 (Length: 241)
Name: NF10942_low_28
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 47572107 - 47571898
Alignment:
| Q |
15 |
gacgttggaacggtaagcataatcggaagcagaagtaatgttccttgtgcagttatagtaaggatgtgttgcatcattagcagcagctagtatgatggga |
114 |
Q |
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| T |
47572107 |
gacgttggaacggtaagcataaccggaagcagaagtaatgttccttgtgcagttatagtaaggatgtgttgcatcattagcaggagcttgtatgatggga |
47572008 |
T |
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| Q |
115 |
gaaggaaagcagtgaaaaaagagggaaaagaaagttggaagtgtaagtagcaaatggaaggattccataattggggtgaactaggagctcaaatgttggt |
214 |
Q |
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| T |
47572007 |
gaaggaaagcagtgaaaaaagagggaaaagaaagttggaagtgtaagtagcaaatggaaggattccatacttggggtgaactaggagctcaaatgttggt |
47571908 |
T |
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| Q |
215 |
actggcttat |
224 |
Q |
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|||||||||| |
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| T |
47571907 |
actggcttat |
47571898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 47581767 - 47581644
Alignment:
| Q |
53 |
tgttccttgtgcagttatagtaaggatgtgttgcatcattagcagcagctagtatgatgggagaaggaaagcagtgaaaaaagagggaaaagaaagttgg |
152 |
Q |
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| T |
47581767 |
tgttccgtgtgcagttatagaaagcatgtgtgccattatcaatagcagcttgtatgatgggagaaggagagcaatgaacaaagagggaaaagaaagttgc |
47581668 |
T |
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| Q |
153 |
aagtgtaagtagcaaatggaagga |
176 |
Q |
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| T |
47581667 |
aagtaaaaacagcaaatggaagga |
47581644 |
T |
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