View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_3 (Length: 556)
Name: NF10942_low_3
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 217 - 445
Target Start/End: Complemental strand, 8170003 - 8169775
Alignment:
| Q |
217 |
aaaaacgttctccctctacaatcttcttggctgaaacccatcagatatgtcatcgatccaacttctaaatgaaaacaagtatgattttccacttctccga |
316 |
Q |
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| T |
8170003 |
aaaaaagttctccctctacaatcttcttggctgaaacccatcagatatgtcaccgatccaacttctaactgaaaacaagtatgattttccacttctccga |
8169904 |
T |
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| Q |
317 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcaattgaaaatattccaatcg |
416 |
Q |
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| T |
8169903 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcagttgaaaatattccaatcg |
8169804 |
T |
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| Q |
417 |
accaatcctgttctgttgatgtcattttg |
445 |
Q |
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| T |
8169803 |
accaatcatgttctgttgatgtcattttg |
8169775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 8167941 - 8167885
Alignment:
| Q |
486 |
taagttttaccattaaaatataataacaaatatctcttatgttgtacatagcctatg |
542 |
Q |
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| T |
8167941 |
taagttttaccattaaaatataataacaaatatctcttatgttgtacatagcctatg |
8167885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 8169709 - 8169658
Alignment:
| Q |
444 |
tgcagcttgctttggttaaagtgaagttatactcaccttagataagttttac |
495 |
Q |
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| T |
8169709 |
tgcagcttgctttggttaaagtgaagttatactcaccttagataagttttac |
8169658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 8172544 - 8172461
Alignment:
| Q |
134 |
aaaaactaatatattaata-cttttctaggttctaaaacctacaacnnnnnnnnnnttgtacatagaaatattgacgggaatataaa |
219 |
Q |
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| T |
8172544 |
aaaaactaatatattaataacttttctaggttctaaaacctacaa---aaaaaaaattgtacatagaaatattgacgggaatataaa |
8172461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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