View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_4 (Length: 524)
Name: NF10942_low_4
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 163 - 513
Target Start/End: Original strand, 35965391 - 35965742
Alignment:
| Q |
163 |
tggtgaatattcgcggttaataggggagaggaccaaatatttaacaacttggactgtttatgagtctatggaactaaacaattcacgtagatgtctagat |
262 |
Q |
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| T |
35965391 |
tggtgaatattcgcggttaataggggagaggaccaaatatttaacaacttggactgtttatgagtctatggaactaaacaatttacgtagatgtctagat |
35965490 |
T |
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| Q |
263 |
tatgtgtcagaaaaacacaaacatttaggttagctgaaaataaacacacactttcagttgggtggttgagtccagctggaatagtaaatgtatgtttggt |
362 |
Q |
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| T |
35965491 |
tatgtgtcagaaaaacacaaacatttaggttagctgaaaataaacacacactttcagttgggtggttgagtccagctggaatagtaaatgtatgtttggt |
35965590 |
T |
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| Q |
363 |
ttcactttttattagtataattgattttgtatttagaattgattattaacacctaacttggagggtggtgggtcatctccttcctgctgaccaatgagat |
462 |
Q |
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| T |
35965591 |
ttcactttttgttagtataattgattttgtatttagaattgattataaacacctaacttggagggtggtgggtcatctccttcctgctgaccaatgagat |
35965690 |
T |
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| Q |
463 |
ttcaacgattataaattatagcttcgttctcaccacac-tttgatgtccatc |
513 |
Q |
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| T |
35965691 |
ttcaacgattataaattatagcttcgttctcaccacacgtttgatgtccatc |
35965742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 35965309 - 35965361
Alignment:
| Q |
89 |
ctgacataaaaagaggagcagagaaaaaggccttgaagttcgtgcagttgcat |
141 |
Q |
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| T |
35965309 |
ctgacataaaaagaggagcagagaaaaaggccttgaagttcgtgcagttgcat |
35965361 |
T |
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