View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10942_low_8 (Length: 490)

Name: NF10942_low_8
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10942_low_8
NF10942_low_8
[»] chr4 (1 HSPs)
chr4 (18-481)||(14943645-14944109)
[»] chr1 (8 HSPs)
chr1 (18-416)||(21307070-21307467)
chr1 (146-402)||(22615968-22616224)
chr1 (412-444)||(21307484-21307516)
chr1 (18-142)||(22611678-22611802)
chr1 (412-444)||(18217656-18217688)
chr1 (412-444)||(20863502-20863534)
chr1 (412-444)||(21312165-21312197)
chr1 (412-444)||(22616255-22616287)
[»] chr5 (4 HSPs)
chr5 (22-410)||(20062122-20062510)
chr5 (114-404)||(21379847-21380131)
chr5 (18-127)||(19220629-19220738)
chr5 (236-402)||(22804292-22804458)
[»] chr3 (2 HSPs)
chr3 (18-233)||(4771069-4771284)
chr3 (249-416)||(4770689-4770856)
[»] scaffold2063 (1 HSPs)
scaffold2063 (29-350)||(694-1015)
[»] chr7 (2 HSPs)
chr7 (186-400)||(16053661-16053875)
chr7 (18-165)||(16904675-16904822)
[»] chr6 (1 HSPs)
chr6 (18-176)||(14635049-14635207)
[»] scaffold0054 (2 HSPs)
scaffold0054 (236-295)||(79582-79641)
scaffold0054 (412-444)||(79779-79811)
[»] chr2 (2 HSPs)
chr2 (248-308)||(24987369-24987429)
chr2 (412-444)||(24987554-24987586)


Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 14944109 - 14943645
Alignment:
Q  18 atgttgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttga 117  Q
    ||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||    
T  14944109 atgttgatcccttaaaagatgtcgatgcaatgtacactgaagttgcaagttgtaacgtggtggacgccattgtggacgctgttgaaaagctatttgtcga 14944010  T
Q  118 agcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaaggaa 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |    
T  14944009 agcaaaagatgatgttgctcaatgtcatatggtagaagtttctcgaagccccaaagatgctgacgaaatcatttcagaatctctgtttcatgagaaggca 14943910  T
Q  218 aaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcgg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||    
T  14943909 aaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattatgaggtaatgttgtgccccagatgtagttcgg 14943810  T
Q  318 tattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaacgttctatttcat 417  Q
    |||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14943809 tattcgacaaagaggctaccaaaagccttaaaaaatttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaacgttctatttcat 14943710  T
Q  418 caataactcttcgaccactaattatgt-nnnnnnntggtcaaggaaaaacttttgtgccctatgc 481  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||| |||||||||    
T  14943709 caataactcttcgaccactaattatgtaaaaaaaatggtcaaggaaaaacttttgggccctatgc 14943645  T

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Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 21307070 - 21307467
Alignment:
Q  18 atgttgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttga 117  Q
    |||| ||||| |||||||||||||||| |||||||| | ||||||||||||||||| ||||||| ||||||||  ||  ||| ||||| |||| | |  |    
T  21307070 atgtggatccattaaaagatgtcgacgtaatgtacaatgaagttgcaagttgtaacatggtggaagccattgcatacgttgtggaaaaactatctgtcaa 21307169  T
Q  118 agcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaaggaa 217  Q
    || ||| ||||||||||   ||| ||| ||||||||||||||| |||| |||||||||||||| |||||| ||||||||  ||  || |||||||||| |    
T  21307170 agaaaatgatgatgttggctaatatcagatggtagaagtttctggaagtcccaaagatgctgatgaaatcttttcagaacttcagttcgatgagaaggca 21307269  T
Q  218 aaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcgg 317  Q
    ||| || |||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| || || ||||   ||||||    
T  21307270 aaaacaacttatcccatggttgaagaggagctgattgatttcctcaattgttgcagattgaagaattctgaggtaatgttgtg-cctagatgaagttcgg 21307368  T
Q  318 tattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaacgttctatttca 416  Q
    | |||||||| ||| ||||||||| |||||| | |   ||||||||||| ||||| ||||||||||||| | ||||||||| ||||| ||||| |||||    
T  21307369 tgttcgacaatgaggctaccaaaatccttgacaatgacattccagaatccaagaagagaggaaaatggtatactgatcataaaccaaagttctctttca 21307467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 146 - 402
Target Start/End: Original strand, 22615968 - 22616224
Alignment:
Q  146 atggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaaggaaaaagcagcttatcccatggctgaagagg 245  Q
    |||||||||| |||| ||  |||||||  |||  ||||| |||| ||| || ||| |||| |||||||||| ||||  |   ||||||||||||||||||    
T  22615968 atggtagaagcttctggagaccccaaaagtgcctacgaagtcatctcataaactcaatttcatgagaaggagaaagtggtcgatcccatggctgaagagg 22616067  T
Q  246 agttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcgacaaagagtctaccaaaagcct 345  Q
    |  |  ||||||| |||||||| ||||| || || ||||| ||| | || || |||||||  | | | |  || |||||||||||| ||||||||||| |    
T  22616068 aactagtcgattttctcaatcggtgcaggttaaaaaattcggagatcattttgtgccccaagtatagcttcgtgttcgacaaagaggctaccaaaagctt 22616167  T
Q  346 tgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagacc 402  Q
    |||   ||||||| || |||| ||||||||||||||||||| |||||||||||||||    
T  22616168 tgagggttttatttcaaaatccaagaaaagaggaaaatggtatgctgatcatagacc 22616224  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 21307484 - 21307516
Alignment:
Q  412 tttcatcaataactcttcgaccactaattatgt 444  Q
    |||||||||||||||||||||||||||||||||    
T  21307484 tttcatcaataactcttcgaccactaattatgt 21307516  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 22611678 - 22611802
Alignment:
Q  18 atgttgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttga 117  Q
    |||| ||||||||||| || ||| |  ||||||||| | ||||||||| ||||||||| ||||| || |||| |||| |||| |||||  ||| | ||||    
T  22611678 atgtagatcccttaaaggacgtcaatccaatgtacactgaagttgcaacttgtaacgtagtggaagcgattgtggacgctgtcgaaaatatatctgttga 22611777  T
Q  118 agcaaaagatgatgttgctaaatgt 142  Q
    |||||||  |||| ||||| |||||    
T  22611778 agcaaaacttgatattgcttaatgt 22611802  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 18217656 - 18217688
Alignment:
Q  412 tttcatcaataactcttcgaccactaattatgt 444  Q
    |||||||||||||||||||||||| ||||||||    
T  18217656 tttcatcaataactcttcgaccaccaattatgt 18217688  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 20863534 - 20863502
Alignment:
Q  412 tttcatcaataactcttcgaccactaattatgt 444  Q
    ||||||||||||||||||||| |||||||||||    
T  20863534 tttcatcaataactcttcgacaactaattatgt 20863502  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 21312165 - 21312197
Alignment:
Q  412 tttcatcaataactcttcgaccactaattatgt 444  Q
    |||||||||||||||||||||||| ||||||||    
T  21312165 tttcatcaataactcttcgaccaccaattatgt 21312197  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 22616255 - 22616287
Alignment:
Q  412 tttcatcaataactcttcgaccactaattatgt 444  Q
    |||||||||||||| ||||||||||||||||||    
T  22616255 tttcatcaataactattcgaccactaattatgt 22616287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 22 - 410
Target Start/End: Original strand, 20062122 - 20062510
Alignment:
Q  22 tgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttgaagca 121  Q
    |||||| ||||| | |||||| || |||||||   |||||||||| || ||||| ||||| |||||||| ||  |||||||||| |||| | | ||||||    
T  20062122 tgatccattaaagggtgtcgatgcgatgtacacagaagttgcaagctgcaacgtagtggaagccattgcagatgctgttgaaaaactatatgtcgaagca 20062221  T
Q  122 aaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttga-tgagaaggaaaaa 220  Q
    ||||||||||||| | ||| ||| ||||||||||||||| |||  ||||| | || ||||||||||| | | ||| ||| | || | |||||||||||||    
T  20062222 aaagatgatgttgttgaatttcagatggtagaagtttctggaaatcccaagggtgttgacgaaatcactcctgaa-ctccagttcaatgagaaggaaaaa 20062320  T
Q  221 gcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtat 320  Q
    | ||||||||||| | ||||| |||||||||| |||||||| |||||||| ||||||||||| ||| |||||||||| |||||||||| | |||| ||||    
T  20062321 gaagcttatcccacgactgaacaggagttgattgatttccttaatcgttgtagattgaagaactctaaggtaatgttgtgccccagatgtagttcagtat 20062420  T
Q  321 tcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaacgttct 410  Q
    ||||||||||| |||| ||||||||||||  | || |||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||    
T  20062421 tcgacaaagaggctactaaaagccttgaacgtattgttccagaatctaagaagagaggaaaatggtctactgatcatagaccaaagttct 20062510  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 114 - 404
Target Start/End: Complemental strand, 21380131 - 21379847
Alignment:
Q  114 ttgaagcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaa 213  Q
    |||||||||||| |||||||||| ||||||| ||||| || |||||| ||  |||||||  |||||| ||| |||||| ||| |||| ||||||||||||    
T  21380131 ttgaagcaaaagttgatgttgctgaatgtcagatggtggaggtttctggagaccccaaaagtgctgatgaagtcatttgagagtctcaatttgatgagaa 21380032  T
Q  214 ggaaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgt 313  Q
    ||        ||||| |  |||||||||||| |  |||| ||||||||||||||||| || |||||||| ||| |||| ||| |||||| |||||   ||    
T  21380031 ggtg------gcttaccttatggctgaagagaaactgattgatttcctcaatcgttgtaggttgaagaactctaaggttatggtatgccacagatgcagt 21379938  T
Q  314 tcggtattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaa 404  Q
    |  |  |||||||||||| |||| ||||| |||||   |||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  21379937 tttgcgttcgacaaagaggctactaaaagtcttgagggttttattccaaaatcaaagaaaagaggaaaatggtttgttgatcatagaccaa 21379847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 19220629 - 19220738
Alignment:
Q  18 atgttgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttga 117  Q
    ||||||||||||||||||| ||| |||| ||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | | ||    
T  19220629 atgttgatcccttaaaagacgtcaacgcgatgtacactgaagttgcaagttgtaacgtggtggaagccattgcagacactgttgaaaagctatatgtcga 19220728  T
Q  118 agcaaaagat 127  Q
    |||| |||||    
T  19220729 agcagaagat 19220738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 402
Target Start/End: Complemental strand, 22804458 - 22804292
Alignment:
Q  236 gctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcgacaaagagtcta 335  Q
    |||||||| || ||||| || ||||||||||| || ||  ||||||||| |||||||||||| ||||   ||| | || | ||||| ||||||||| | |    
T  22804458 gctgaagaagaattgattgacttcctcaatcgatgtaggctgaagaattatgaggtaatgttttgccttcgatgtagtgctgtatttgacaaagaggcaa 22804359  T
Q  336 ccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagacc 402  Q
    | ||| || |||||| || ||| ||| |  | ||||||||||| ||||||| || ||||||||||||    
T  22804358 ctaaaggcgttgaaagttctatcccaaaccctaagaaaagagggaaatggtatggtgatcatagacc 22804292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 4771284 - 4771069
Alignment:
Q  18 atgttgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttga 117  Q
    |||| ||||||||||||||||||||||||||||||  | | ||||||||||||||| | ||||| ||||||| |||||||||||||||||||||| | ||    
T  4771284 atgtcgatcccttaaaagatgtcgacgcaatgtacgctgatgttgcaagttgtaacatagtggaagccattgtggacactgttgaaaagctatttgtcga 4771185  T
Q  118 agcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaaggaa 217  Q
    || |||||||||||||||| ||||||| ||||||||||||||| ||| | |||||||||||||||||||||||| |||| ||| |||| ||||||||| |    
T  4771184 agaaaaagatgatgttgctgaatgtcaaatggtagaagtttctggaaactccaaagatgctgacgaaatcattttagaacctcgatttaatgagaaggca 4771085  T
Q  218 aaagcagcttatccca 233  Q
    |||||| |||||||||    
T  4771084 aaagcaacttatccca 4771069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 249 - 416
Target Start/End: Complemental strand, 4770856 - 4770689
Alignment:
Q  249 tgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcgacaaagagtctaccaaaagccttga 348  Q
    |||| |||||| ||||| |||||| ||||||||||||| |||||||||| ||||| |||| | ||||| |||| ||||||||| |||| |||||||||||    
T  4770856 tgattgatttcgtcaattgttgcatattgaagaattcttaggtaatgttgtgccctagatgtagttcgatatttgacaaagaggctacaaaaagccttga 4770757  T
Q  349 aatttttattccagaatcaaagaaaagaggaaaatggtctgctgatcatagaccaacgttctatttca 416  Q
    || | ||||||| ||||| |||||||||| ||| |||| ||||| ||||| ||||||||||| |||||    
T  4770756 aaatcttattcccgaatccaagaaaagagaaaattggtttgctggtcatataccaacgttctctttca 4770689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2063 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold2063
Description:

Target: scaffold2063; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 29 - 350
Target Start/End: Original strand, 694 - 1015
Alignment:
Q  29 ttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttgaagcaaaagatg 128  Q
    |||||||| ||||||||||||||||   ||||||||||||| ||||| ||||| |||||||| ||  || ||||||| ||||   | ||||| |||||||    
T  694 ttaaaagacgtcgacgcaatgtacacagaagttgcaagttgcaacgtagtggaagccattgcagatgctattgaaaaactatccgtcgaagcgaaagatg 793  T
Q  129 atgttgctaaatgtcatatggtagaagtttctagaagccccaaagatgctgacgaaatcatttcagaatctctatttgatgagaaggaaaaagcagctta 228  Q
    || ||| | ||||||| ||||| ||||||||| |||| |||||||||||| || |||||| |||||||  ||  || |||||||||||||||||| ||||    
T  794 atattgttgaatgtcagatggttgaagtttctggaagtcccaaagatgctaacaaaatcacttcagaacttcatttcgatgagaaggaaaaagcaactta 893  T
Q  229 tcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagattttgttcggtattcgacaaa 328  Q
    |||||||| |||||||||| |||| |||||||||||| |||| | ||| ||||| |||||||||||||| |||   |||| | ||||   ||||||||||    
T  894 tcccatggatgaagaggagctgattgatttcctcaattgttgtaaattaaagaactctgaggtaatgttgtgctttagatgtagttctaaattcgacaaa 993  T
Q  329 gagtctaccaaaagccttgaaa 350  Q
    ||| ||| ||||||||||||||    
T  994 gaggctaacaaaagccttgaaa 1015  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 400
Target Start/End: Complemental strand, 16053875 - 16053661
Alignment:
Q  186 tcatttcagaatctctatttgatgagaaggaaaaagcagcttatcccatggctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattc 285  Q
    ||||||||||||||| ||||| |||||||   ||||  |||||||  |||||||||||||| ||||| |||||||||||  ||||||| || ||||||||    
T  16053875 tcatttcagaatctcaatttgctgagaagatgaaagtggcttatcatatggctgaagaggaattgattgatttcctcaactgttgcaggttaaagaattc 16053776  T
Q  286 tgaggtaatgttatgccccagattttgttcggtattcgacaaagagtctaccaaaagccttgaaatttttattccagaatcaaagaaaagaggaaaatgg 385  Q
    |||||| ||||||||||||||||   |||  || |||| ||||||| |||| ||   |||| |   |||||||||| |||||||||| ||||||||||||    
T  16053775 tgaggttatgttatgccccagatgcagttatgtgttcggcaaagaggctactaaggtccttaagggttttattccaaaatcaaagaagagaggaaaatgg 16053676  T
Q  386 tctgctgatcataga 400  Q
    | |||||||||||||    
T  16053675 tttgctgatcataga 16053661  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 16904822 - 16904675
Alignment:
Q  18 atgttgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttga 117  Q
    |||| |||||||||| |||  ||||| ||||||||  | ||||||| ||||||||| | ||||| | ||||| |||  ||||||||||||||| | |  |    
T  16904822 atgtcgatcccttaagagacatcgacacaatgtacgatgaagttgctagttgtaacatagtggaagtcattgtggatgctgttgaaaagctatctgtcaa 16904723  T
Q  118 agcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaag 165  Q
    || ||||| ||||||| || ||| | | ||||||||||||||| ||||    
T  16904722 agaaaaaggtgatgttactgaatctaagatggtagaagtttctggaag 16904675  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 14635207 - 14635049
Alignment:
Q  18 atgttgatcccttaaaagatgtcgacgcaatgtacattaaagttgcaagttgtaacgtggtggacgccattgcggacactgttgaaaagctattttttga 117  Q
    |||||||||| |||||||| ||| |||||||||||||  | ||||||| ||||||||| ||||| |||||||  ||   | ||||||   | | | | ||    
T  14635207 atgttgatccattaaaagacgtcaacgcaatgtacatggatgttgcaatttgtaacgtagtggaagccattgtagatgttattgaaagattgtctatcga 14635108  T
Q  118 agcaaaagatgatgttgctaaatgtcatatggtagaagtttctagaagccccaaagatg 176  Q
    |||||||  ||| |||||| ||| ||| ||||||||||| |||||||| ||||||||||    
T  14635107 agcaaaaactgacgttgctgaatctcagatggtagaagtatctagaagtcccaaagatg 14635049  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 79582 - 79641
Alignment:
Q  236 gctgaagaggagttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatg 295  Q
    |||||||| |||||||| |||||||||||||| ||||   | ||||||||||||||||||    
T  79582 gctgaagaagagttgattgatttcctcaatcgatgcaagctaaagaattctgaggtaatg 79641  T

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Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 79779 - 79811
Alignment:
Q  412 tttcatcaataactcttcgaccactaattatgt 444  Q
    |||||||||||||||||||||||| ||||||||    
T  79779 tttcatcaataactcttcgaccacaaattatgt 79811  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 24987369 - 24987429
Alignment:
Q  248 ttgatcgatttcctcaatcgttgcagattgaagaattctgaggtaatgttatgccccagat 308  Q
    ||||| |||||||||||||| |||||  ||||||||||| |||||||| | ||||| ||||    
T  24987369 ttgattgatttcctcaatcgatgcaggctgaagaattctaaggtaatgctctgccctagat 24987429  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 24987554 - 24987586
Alignment:
Q  412 tttcatcaataactcttcgaccactaattatgt 444  Q
    |||||||||||||||||||||||| ||||||||    
T  24987554 tttcatcaataactcttcgaccaccaattatgt 24987586  T

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