View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10942_low_9 (Length: 483)
Name: NF10942_low_9
Description: NF10942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10942_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 4 - 467
Target Start/End: Original strand, 41242942 - 41243404
Alignment:
| Q |
4 |
gagaagcagagataatcctctattaattcttattcatgcatatgtgagattgtacaatctgctatactaattgatagtgtcagtactgtctctaatttta |
103 |
Q |
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| T |
41242942 |
gagaaccaaagataatcctctattaattcttattcatgcatatgtgagattgtacaatctgctatactaattgatagtgtcagtactgtctctaatttta |
41243041 |
T |
|
| Q |
104 |
tgcaacttatagaaataaattgttcttaaacctaaccatgagctcataaactttttgaagaaatgtagaaacccaatcctagnnnnnnn-ttgatttagg |
202 |
Q |
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| T |
41243042 |
tgcaacttatagaaataaattgttcttaaacctaactatgagctcataaactttttgaagaaatttagaaacccaatcctaggataaaaattgatttagg |
41243141 |
T |
|
| Q |
203 |
taaaa-attagagaaagaaaaacatgacacctctaatttcaatccaagacgctaaaattagaaatttcatattaattaaagaaccgcattaacgacactt |
301 |
Q |
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| T |
41243142 |
taaaaaattagagaaagaaaaacatgaaacctctaatttcaatccaagacgctaaaattagaaatttcatattaattaaagaaccgcattaacgacactt |
41243241 |
T |
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| Q |
302 |
catagtaaatcatgattcaatcatcaccacatgattaattaagatcacacgatgatttggagatcacattgtatttcacttaaccgactcaacaaatttt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41243242 |
catagtaaatcatgattcaatcatcaccacatgattaattaagatcacacgatgatttggagatcacattgtatttcacttaaccgactcaacaaattt- |
41243340 |
T |
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| Q |
402 |
tataccacgaatttccgaagctcatcctatataaagacacttgcataggagaaaagtacacaatca |
467 |
Q |
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| T |
41243341 |
--taccacgaatttccgaagctcatcctatataaagacacttgcatacgagaaaagtacacaatca |
41243404 |
T |
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