View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10943_high_5 (Length: 302)
Name: NF10943_high_5
Description: NF10943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10943_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 43489403 - 43489124
Alignment:
| Q |
18 |
aaatcttcttgaaaaatctagcaattaagttcacgatcattgaaaactgacatttgcatttctaacatccacacatctcacattcttagtagcaaaacac |
117 |
Q |
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| T |
43489403 |
aaatcttcttgaaaaatctagcaattaagttcacgatcattgaaaactgacatttgcatttctaacatccacacatctcacattcttagtagcaaaacac |
43489304 |
T |
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| Q |
118 |
aactattataaataagattgttcctcctagctagtttcttcaatattcataacacatttatcatat--tcttactaacaaatacaactattatggcacct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43489303 |
aactattataaataagattgttcctcctagctagtttcttcaatattcataacacatttatcatattctcttactaacaaatacaactattatggcacct |
43489204 |
T |
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| Q |
216 |
catggagattcattacctagctcaatctctaggaccaacaacattgtatgctccaaaccaccaaaacctaattcatctca |
295 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489203 |
catggagattcattacctagctcaatctctaggagcaacaacattgtatgctccaaaccaccaaaacctaattcatctca |
43489124 |
T |
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