View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10943_low_2 (Length: 413)
Name: NF10943_low_2
Description: NF10943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10943_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 39395441 - 39395044
Alignment:
| Q |
1 |
tagcattttcttcaactctttgatattctcaaatgatgcagcttcatgaattttcaacatctcattctcatgaacaagcaaactcagactatcttgtaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395441 |
tagcattttcttcaactctttgatattctcaaatgatgcagcttcatgaattttcaacatctcattctcatgaacaagcaaactcagactatcttgtaat |
39395342 |
T |
|
| Q |
101 |
ctaccattttcagcttttgcaatttcggcagcttctttcgcaacattagcttcattcaaagcttgttttagtatgtcgcgcaatttttgattctcttcct |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395341 |
ctaccattttcagcttttgcaatttcggaagcttctttcgcaacattagcttcattcagagcttgttttagtatgtcgcgcaatttttgattctcttcct |
39395242 |
T |
|
| Q |
201 |
ttgaaacttttgttttactctcagcttcttgaagcaaatctagtaatcttgatgtttcctgttgtgcaagcaacctttcctcatcagctcttttaataca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395241 |
ttgaaacttttgttttactctcagcttcttgaagcaaatctagtaatcttgatgtttcttgttgtgcaagcaacctttcctcatcagctcttttaataca |
39395142 |
T |
|
| Q |
301 |
agtaacaaactcagtttcttttccattccatgctaaaagtgattcttcagcttctaatctcaatctctccgcggtgtttttgaacctctcagcttctt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395141 |
agtaacaaactcagtttcttttccattccatgctaaaagtgattcttcagcttctaatctcaatctctccgcggtgtttttgaacctctcagcttctt |
39395044 |
T |
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