View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10943_low_3 (Length: 403)
Name: NF10943_low_3
Description: NF10943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10943_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 44281110 - 44281495
Alignment:
| Q |
18 |
gttgaagcattcaagctgcaagtgaaaccaaagcagaaaaggagcaagtattaaatcagtttttctttcattgtttgatagaaaatagtgagtgacgcat |
117 |
Q |
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| T |
44281110 |
gttgaagcattcaagctgcaagtgaaaccaaagcagaaaaggagcaagtattaaatcagtttttctttcattgtttgatagaaaatagtgagtgacgcat |
44281209 |
T |
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| Q |
118 |
tcatctgtggaaaaatagtcctgagaaaatactgcctcagatgactattcaaatattgcaacttgtttcaaagcagtactaactaacaagtttgaatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281210 |
tcatctgtggaaaaatagtcctgagaaaatactgcctcagatgactattcaaatattgcaacttgtttcaaagcagtactaactaacaagtttgaatctt |
44281309 |
T |
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| Q |
218 |
tcaactgaaaaatatattgggttagttacatattattcctcttcttcttatatgaattatgctgttttaagaatcctcatgtaactccctatttctgttc |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281310 |
tcaactgaaacatatattgggttagttacatattattcctcttcttcttatatgaattatgctgttttaagaatcctcatgtaactccctatttctgttc |
44281409 |
T |
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| Q |
318 |
cactgaactccatatttctcnnnnnnnnnnnnnnnnnnncaagaatacgcaagaacttctcaagagaatccttgttacatggggac |
403 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281410 |
cactgaacaccatatttctctttttttctttttctttttcaagaatacgcaagaacttctcaagagaatccttgttacatggggac |
44281495 |
T |
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