View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10943_low_9 (Length: 219)
Name: NF10943_low_9
Description: NF10943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10943_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 5789975 - 5790074
Alignment:
| Q |
104 |
tgtggatgagaagagggaatcc-tgaacttgtccaaaaccacaaaccaaaggggaaccctactgttaaactctgacgttgcactttctgtcttttcctct |
202 |
Q |
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| T |
5789975 |
tgtggatgagaagagggaatccctgaacttgtccaaaaccacaaaccaaaggggaaccctactgttaaactctgacgttgcactttctgtcttttcctct |
5790074 |
T |
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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 5789882 - 5789946
Alignment:
| Q |
18 |
aatgttaccaagaaaaatccaactatagccacacaaatatgaacaaaaatatagacttggttgtt |
82 |
Q |
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| T |
5789882 |
aatgttaccaagaaaaatccaactatagccacacaaatatgaacaaaaatatagacttggttgtt |
5789946 |
T |
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