View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10944_low_1 (Length: 545)
Name: NF10944_low_1
Description: NF10944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10944_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 49753689 - 49754215
Alignment:
| Q |
1 |
ttgaagtttagtttagctagaagtagaagcaacaaaaagagttgaatttgtgttagtgtgtgatgaaaggttgtgagtgttgtctttaaaatataaggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49753689 |
ttgaagtttagtttagctagaagtagaagcaacagaaagagttgaatttgtgttagtgtgtgatgaaaggttgtgagtgttgtctttaaaatataaggga |
49753788 |
T |
|
| Q |
101 |
acgcgtacaagtaagtctaaatataaataaaatttcaattttcaatttgtttttggacactgcattggcttaaactagcatgtcatcatgtgcttgggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49753789 |
acgcgtacaagtaagtctaaatataaataaaattacaattttcaatttgtttttggacactgcattggcttaaactagcatgtcatcatgtgcttgggga |
49753888 |
T |
|
| Q |
201 |
aaaggaaaggaaggtggggaaataataaaagaagggatagtactttgcttgcgtcatgtggggacttaagtgattttgttttctggggcattttagaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49753889 |
aaaggaaaggaaggtggggaaataataaaagaagggatagtactttgcttgcgtcatgtggggacttaagtgattttgttttctggggcattttagaggt |
49753988 |
T |
|
| Q |
301 |
tgggcctaaagtggggtgggtgtagtttcaaatgaaccaggttgaatatagtaatagaattgacgctaggttttcatattcaaacacgaagaacactttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49753989 |
tgggcctaaagtggggtgggtgtagtttcaaatgaaccaggttgaatatagtaatagaattgacgctaggttttcatattcaaacacgaagaacactttt |
49754088 |
T |
|
| Q |
401 |
gttagattggttcagggacaaacacttgcttgatagcaccattgatcgtactccatagtatctcaacttcaggcggtaattgctccttagattg-tttgt |
499 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
49754089 |
gttagattggttcaggtacaaacacttgcttgatagcaccattgatcgtactccatagtatctcaacttcaggtggtaattgctccttagattgttttgt |
49754188 |
T |
|
| Q |
500 |
gagagctgaaatgattttagacatatta |
527 |
Q |
| |
|
||||||| |||||||| ||||||||||| |
|
|
| T |
49754189 |
gagagct-aaatgattctagacatatta |
49754215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University