View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10944_low_2 (Length: 418)
Name: NF10944_low_2
Description: NF10944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10944_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 33993814 - 33994227
Alignment:
| Q |
1 |
tttattattgtgggaaataaatgacgcgaagtgattggcatgtgcttagagaagcaaacttgattcgaataaagctatttgtttggcaaaactgcatcat |
100 |
Q |
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| T |
33993814 |
tttattattgtgggaaataaatgacgtgaagtgattggcatgtgcttagagaagcaaacttgattcgaataaagctatttgtttggcaaaactgcatcat |
33993913 |
T |
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| Q |
101 |
gaatcctttattaccatttttcatgccgagttagtcatttat-----------------aatgtcaatattgttggaccaaacttcactttttcatccta |
183 |
Q |
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| T |
33993914 |
gaatcctttattaccatttttcatgtcgagttagtcatttatgtttaaaaatgtttaagaatgtcaatatt-ttggaccaaacttcac-ttttcatccta |
33994011 |
T |
|
| Q |
184 |
cgctatcaaaagccttacgtggccattcaaaaagataaatttacattttcgattcatcaagaaaacatctaaattacatcatagtgagtgttttaatatc |
283 |
Q |
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| T |
33994012 |
cgctatcaaaagccttacgtggccattcaaaaagataaa-ttacattttcgattcatcaagaaaacatctaaattacatcatagtgagtgttataatatc |
33994110 |
T |
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| Q |
284 |
caatccatcaaaatcaacacatcnnnnnnnnnnnnnatctaaggttgtgattttcttgtcaaagatggtgtacataattgtggtgctgagtgatgaaaca |
383 |
Q |
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| T |
33994111 |
caatccatcaaaattaacacatcttttttagtttttatctaaggttgtgattttcttgtcaaagatggtgtacataattgtggtgctgagtgatgaaaca |
33994210 |
T |
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| Q |
384 |
tatgttatagtaaatca |
400 |
Q |
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| T |
33994211 |
tttgttatagtaaatca |
33994227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 41194314 - 41194255
Alignment:
| Q |
206 |
ccattcaaaaagataaatttacattttcgattcatcaagaaaacatctaaattacatcata |
266 |
Q |
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| T |
41194314 |
ccatttaaaaagataaatt-acatcttcaattcatcaagataacatctaaattacatcata |
41194255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 12692829 - 12692765
Alignment:
| Q |
231 |
ttcgattcatcaagaaaacatctaaattacatcatagtgagtgttttaatatccaatccatcaaa |
295 |
Q |
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| T |
12692829 |
ttcgattcatcacgataacatttaaattacatcataatgattgttatgttatctaatccatcaaa |
12692765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 266
Target Start/End: Complemental strand, 19045269 - 19045238
Alignment:
| Q |
235 |
attcatcaagaaaacatctaaattacatcata |
266 |
Q |
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| T |
19045269 |
attcatcaagaaaacatctaaattacatcata |
19045238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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