View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10944_low_3 (Length: 376)
Name: NF10944_low_3
Description: NF10944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10944_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 41076792 - 41077059
Alignment:
| Q |
1 |
ccattacttggaccgtgcatcaacattgnnnnnnngttttgagatcattctcagaaaagaaaatgggtgaaattcaacacacaatattctgctaccaaaa |
100 |
Q |
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| T |
41076792 |
ccattacttggaccgtgcatcaacattgcccccc-gttttgagatcattctcagaaaagaaaatgggtgaaattcaacacacaatattctgctaccaaaa |
41076890 |
T |
|
| Q |
101 |
tttgagattaagttatggcttgctttggatacacaaagcattattaacagcgagataagtatatggggtacagaggtgagtggaaccagtgcgttctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41076891 |
tttgagattaagttatggcttgctttggatacacaaagcattattaacagcgagataagtatatggggtacagaggtgagtggaaccagtgcgttctgtt |
41076990 |
T |
|
| Q |
201 |
ctgactaaaccggagccgtcttcaatggtaacagagtccagacctgttaggatatagaataaagaaaaa |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41076991 |
ctgactaaaccggagccgtcttcaatggtaacagagtccagacctgttaggatatagaataaagaaaaa |
41077059 |
T |
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