View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10944_low_5 (Length: 293)
Name: NF10944_low_5
Description: NF10944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10944_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 50228505 - 50228763
Alignment:
| Q |
14 |
gagagaagaatctagggttgttaatgatattggaaactcaaggaaagaatcttagagggggaagaataagtagtagttgttgattgtgagagaagaacaa |
113 |
Q |
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| T |
50228505 |
gagagaagaatctagggttgttaatgatattggaaactcagggaaagaatcttagagggggaagaataagtagtagttgttgattgtgagagaagaacaa |
50228604 |
T |
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| Q |
114 |
cctgaattggagagacgttgttgcagttgcgaatgagagcatatgtttgtcatctcatctacctcatcgacatttttgaattttgaacgatactgttact |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50228605 |
cctgaattggagagacgttgttgcagttgcaaatgagagcatatgtttgtcatctcatctacctcatcgacatttttgaattttgaacgatactgttact |
50228704 |
T |
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| Q |
214 |
ataatatacctctcgctgctaaaaaactatattaagtattaacaatcatcccttcaatc |
272 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50228705 |
ataatatacctcccgctgctaaaaaactatattaagtattaacaatcatcccttcaatc |
50228763 |
T |
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