View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10944_low_6 (Length: 251)
Name: NF10944_low_6
Description: NF10944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10944_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 33993541 - 33993780
Alignment:
| Q |
12 |
cacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttc |
111 |
Q |
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| T |
33993541 |
cacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttc |
33993640 |
T |
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| Q |
112 |
ttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggc |
211 |
Q |
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| T |
33993641 |
ttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggc |
33993740 |
T |
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| Q |
212 |
atttaaatgttactttgtttggactattatgtgtgtgtgt |
251 |
Q |
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| T |
33993741 |
atttaaatgttactttgtttggactattatgtgtgtgtgt |
33993780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 34000550 - 34000617
Alignment:
| Q |
19 |
tacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtcctt |
86 |
Q |
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| T |
34000550 |
tacaacaggttcagtgagtttgaaactgtataaaggcagtgcttctgtgacgggtcggaagagtcctt |
34000617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 18852424 - 18852217
Alignment:
| Q |
15 |
agactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttc |
114 |
Q |
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| T |
18852424 |
agaccacaacaggttctgtgactttgaaattatacaaaggttctgttactgtaacaggtaggaagagcccctttagcctgtataggcaagatatctcatc |
18852325 |
T |
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| Q |
115 |
atttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggcatt |
214 |
Q |
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| T |
18852324 |
atttgagaatagtgatatatatgatcaagctgatgctgctggttttatccggctttacggtcttccaatgaaggtccgggcaatgcttgagcaaggcatt |
18852225 |
T |
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| Q |
215 |
taaatgtt |
222 |
Q |
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| T |
18852224 |
taagtgtt |
18852217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 42865474 - 42865369
Alignment:
| Q |
76 |
gaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggt |
175 |
Q |
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| T |
42865474 |
gaagagtccttttagcctgtataggcaagatatctcatcatttgagggtagtgagatatatgatcaagctgatgctgctggttttatccggctttacggt |
42865375 |
T |
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| Q |
176 |
cttcca |
181 |
Q |
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|||||| |
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| T |
42865374 |
cttcca |
42865369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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