View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10944_low_7 (Length: 232)

Name: NF10944_low_7

Description: NF10944

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10944_low_7

[»] chr6 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 168; E-Value: 3e-90

Query Start/End: Original strand, 18 - 217

Target Start/End: Complemental strand, 29093156 - 29092958

Alignment:

Q	18	tctaaatgtacctacatgcaaggctggcgatggtggcagcgacagaaataggcagtggtttcatgtatttttacatttgtttacactagttcatccttat	117	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	29093156	tctaaaagtacctacgtgcaaggctggcgatggtggcagcgacagaaataggcagtggtttcatgtatttttacatttgtttacactagt-cttccttat	29093058	T

Q	118	aggttcatgatccgtaaccgtgatttgacatggctcttttggttcattttgagttgcatcttacttgtagcaaggaattaaattactgtgctgtatctct	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29093057	aggttcatgatccgtaaccatgatttgacatggctcttttggttcattttgagttgtatcttacttggagcaaggaattaaattactgtgctgtatctct	29092958	T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 132 - 204

Target Start/End: Complemental strand, 43286977 - 43286905

Alignment:

Q	132	taaccgtgatttgacatggctcttttggttcattttgagttgcatcttacttgtagcaaggaattaaattact	204	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|
T	43286977	taaccatgatttgacattgctcctttggttcattttgatttgcatcttatttggagcatgggattaaaatact	43286905	T

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