View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10945_high_2 (Length: 406)
Name: NF10945_high_2
Description: NF10945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10945_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 34340590 - 34340962
Alignment:
| Q |
19 |
tatcttactttttcttgtcttgaaattcagcatgttgtaatgaatgcaacactattataatggnnnnnnnaacctttaacaacacctatcatttggtaat |
118 |
Q |
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| T |
34340590 |
tatcttactttttcttgtcttgaaattcagcatgttgtaatgaatgcaacactattataatggtttttttaacctttaacaacacctatcatttggtaat |
34340689 |
T |
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| Q |
119 |
acattgatactactaaacagacacttaatcacacattttatttcatatattcatcaaattgactagtgcttgatttggtacaacataatcctaacattct |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340690 |
acattgatactactgaacagacacttaatcacacattttatttcatatattcatcaaattgactagtgcttgatttggtacaacataatcctaacattct |
34340789 |
T |
|
| Q |
219 |
tagcatcaggcctctccttaggattatccatggtgcaaaaggaagcaatcttcaaaaccaaaagcatttgttcctcaaaaccattacctaagagccttgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340790 |
tagcatcaggcctctccttaggattatccatggtgcaaaaggaagcaatcttcaaaaccaaaagcatttgttcctcaaaaccattacctaagagccttgc |
34340889 |
T |
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| Q |
319 |
atcaattgcttccttaggattttccgaagtcatcacatttctcatccacttgaccaaactcatctcatctgtg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340890 |
atcaattgcttccttaggattttccgaagtcatcacatttctcatccacttgaccaaactcatctcatctgtg |
34340962 |
T |
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