View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10945_low_4 (Length: 276)

Name: NF10945_low_4
Description: NF10945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10945_low_4
NF10945_low_4
[»] chr8 (2 HSPs)
chr8 (14-260)||(12934637-12934883)
chr8 (14-95)||(17123569-17123650)
[»] chr4 (2 HSPs)
chr4 (14-260)||(14177907-14178153)
chr4 (14-260)||(28607720-28607966)
[»] chr7 (1 HSPs)
chr7 (14-260)||(15300423-15300669)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 12934883 - 12934637
Alignment:
Q  14 gacatcaatatactttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtatctttcctgcttcatt 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12934883 gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt 12934784  T
Q  114 cgcaattgatcaagaaatctttttagtcaaaacatttctttccctgcttcatccatggcgatatattccacctctgttgttgataaggcaacgcattttt 213  Q
    | |||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||| ||||||||  |||| |||||||||||||| || |||||||    
T  12934783 cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggctacacattttt 12934684  T
Q  214 gcaatttagattgccaagatacagctccccctgcaaaagtaaacaca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12934683 gcaatttagattgccaagatacagctccccctgcaaaagtaaacaca 12934637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 17123650 - 17123569
Alignment:
Q  14 gacatcaatatactttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacg 95  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  17123650 gacatcaatatactttgtacaagagtggtacatcgcattcttactcgaatccaaaacgctttgattatcgcaatggataacg 17123569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 14178153 - 14177907
Alignment:
Q  14 gacatcaatatactttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtatctttcctgcttcatt 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14178153 gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt 14178054  T
Q  114 cgcaattgatcaagaaatctttttagtcaaaacatttctttccctgcttcatccatggcgatatattccacctctgttgttgataaggcaacgcattttt 213  Q
    | |||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||| ||||||||  |||| |||||||||||||| || |||||||    
T  14178053 cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggctacacattttt 14177954  T
Q  214 gcaatttagattgccaagatacagctccccctgcaaaagtaaacaca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14177953 gcaatttagattgccaagatacagctccccctgcaaaagtaaacaca 14177907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 28607720 - 28607966
Alignment:
Q  14 gacatcaatatactttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtatctttcctgcttcatt 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28607720 gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt 28607819  T
Q  114 cgcaattgatcaagaaatctttttagtcaaaacatttctttccctgcttcatccatggcgatatattccacctctgttgttgataaggcaacgcattttt 213  Q
    | |||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||| ||||||||  |||| |||||||||||||| || |||||||    
T  28607820 cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggctacacattttt 28607919  T
Q  214 gcaatttagattgccaagatacagctccccctgcaaaagtaaacaca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28607920 gcaatttagattgccaagatacagctccccctgcaaaagtaaacaca 28607966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 15300669 - 15300423
Alignment:
Q  14 gacatcaatatactttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtatctttcctgcttcatt 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  15300669 gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcacaatggataacgtacctttcctgcttcatt 15300570  T
Q  114 cgcaattgatcaagaaatctttttagtcaaaacatttctttccctgcttcatccatggcgatatattccacctctgttgttgataaggcaacgcattttt 213  Q
    | |||||||||| ||| ||||||||| |||| |||||| |||||||||||| ||||||| ||||||||  |||| |||||||||||||| || |||||||    
T  15300569 cccaattgatcatgaattctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggctacacattttt 15300470  T
Q  214 gcaatttagattgccaagatacagctccccctgcaaaagtaaacaca 260  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  15300469 gcaatttagattgccaagatatagctcaccctgcaaaagcaaacaca 15300423  T

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