View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10945_low_5 (Length: 271)

Name: NF10945_low_5
Description: NF10945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10945_low_5
NF10945_low_5
[»] chr4 (4 HSPs)
chr4 (100-261)||(14174964-14175126)
chr4 (100-261)||(28610752-28610913)
chr4 (25-99)||(28608127-28608201)
chr4 (25-99)||(14177673-14177747)
[»] chr8 (2 HSPs)
chr8 (100-261)||(12931694-12931856)
chr8 (9-99)||(12934403-12934493)
[»] chr7 (3 HSPs)
chr7 (9-99)||(15300189-15300279)
chr7 (19-99)||(6692682-6692762)
chr7 (55-99)||(33415690-33415734)
[»] chr5 (2 HSPs)
chr5 (113-252)||(38996370-38996510)
chr5 (19-99)||(19944632-19944712)
[»] chr3 (3 HSPs)
chr3 (184-261)||(24875544-24875621)
chr3 (100-166)||(24874632-24874698)
chr3 (5-98)||(54968420-54968513)
[»] chr6 (2 HSPs)
chr6 (19-99)||(796059-796139)
chr6 (19-99)||(8273649-8273729)
[»] scaffold0479 (1 HSPs)
scaffold0479 (5-98)||(1634-1727)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 14175126 - 14174964
Alignment:
Q  100 ttgattcctccgatccttcttttctttgttcttccaagatttgcaatttcttttcatatgaccttctcc-ccgcagtgaaaacacttgaaatttcttcga 198  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||| |||||||||    
T  14175126 ttgattcctccggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaaacacttgaactttcttcga 14175027  T
Q  199 ggttgagattgtgatctgtctttggatttattggatctccctctgctcttacttctgtctctg 261  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||    
T  14175026 ggttgagattgtgatctgtctttggatttattggatctccccccgctcttgcttctgcctctg 14174964  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 100 - 261
Target Start/End: Original strand, 28610752 - 28610913
Alignment:
Q  100 ttgattcctccgatccttcttttctttgttcttccaagatttgcaatttcttttcatatgaccttc-tccccgcagtgaaaacacttgaaatttcttcga 198  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||| |||||||||    
T  28610752 ttgattcctccggtccttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaaacacttgaactttcttcga 28610851  T
Q  199 ggttgagattgtgatctgtctttggatttattggatctccctctgctcttacttctgtctctg 261  Q
    |||||||||||||||||||| |||||||||||||||||||| | |||||| |||||| |||||    
T  28610852 ggttgagattgtgatctgtc-ttggatttattggatctccccccgctcttgcttctgcctctg 28610913  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 28608127 - 28608201
Alignment:
Q  25 ggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28608127 ggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatc 28608201  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 14177747 - 14177673
Alignment:
Q  25 ggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  14177747 ggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattgcatacatc 14177673  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 12931856 - 12931694
Alignment:
Q  100 ttgattcctccgatccttcttttctttgttcttccaagatttgcaatttcttttcatatgaccttctcccc-gcagtgaaaacacttgaaatttcttcga 198  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||| |   |||||||||||||||||| |||||||||    
T  12931856 ttgattcctccggtctttcttttctttgttcttccaagatttgcaatttcttttgatgtgaccttcttcgttgcagtgaaaacacttgaactttcttcga 12931757  T
Q  199 ggttgagattgtgatctgtctttggatttattggatctccctctgctcttacttctgtctctg 261  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||    
T  12931756 ggttgagattgtgatctgtctttggatttattggatctccccccgctcttgcttctgcctctg 12931694  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 12934493 - 12934403
Alignment:
Q  9 ccaatgttccttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12934493 ccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatc 12934403  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 15300279 - 15300189
Alignment:
Q  9 ccaatgttccttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15300279 ccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatc 15300189  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 6692762 - 6692682
Alignment:
Q  19 ttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||||| || | |||||||||||||||||| ||||||||  |||| |||||||| || ||||||||||| ||||||    
T  6692762 ttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcgtacatc 6692682  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 33415690 - 33415734
Alignment:
Q  55 actgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||    
T  33415690 actgcatgagctatatctggtctagtgcaaaccattgcatacatc 33415734  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 38996370 - 38996510
Alignment:
Q  113 tccttcttttctttgttcttccaagatttgcaatttcttttcatatgaccttctcc-ccgcagtgaaaacacttgaaatttcttcgaggttgagattgtg 211  Q
    ||||| |||| ||| |||||||||||||| ||||||||||  || ||| ||||||| ||||||||| ||||||||||  |||||  | ||||||| ||||    
T  38996370 tccttattttattttttcttccaagatttacaatttctttggatgtgatcttctccgccgcagtgataacacttgaacattctttaaagttgagactgtg 38996469  T
Q  212 atctgtctttggatttattggatctccctctgctcttactt 252  Q
    ||   || |||||||||||||||| | ||||||||||||||    
T  38996470 ataaatcattggatttattggatcactctctgctcttactt 38996510  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 19944712 - 19944632
Alignment:
Q  19 ttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||||| || | |||||||||||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||    
T  19944712 ttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcatacatc 19944632  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 24875544 - 24875621
Alignment:
Q  184 ttgaaatttcttcgaggttgagattgtgatctgtctttggatttattggatctccctctgctcttacttctgtctctg 261  Q
    ||||| ||| ||||||||||||| ||| |||||||||||||||||||||||| || || ||||||||||||| |||||    
T  24875544 ttgaacttttttcgaggttgagactgtaatctgtctttggatttattggatcaccatcagctcttacttctgcctctg 24875621  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 24874632 - 24874698
Alignment:
Q  100 ttgattcctccgatccttcttttctttgttcttccaagatttgcaatttcttttcatatgaccttct 166  Q
    ||||||||||  |||||||||||||||| |||||||   ||| ||||||||||| || |||||||||    
T  24874632 ttgattcctcttatccttcttttctttgctcttccattgttttcaatttctttttatgtgaccttct 24874698  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 54968420 - 54968513
Alignment:
Q  5 cattccaatgttccttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacat 98  Q
    |||||||||| || || |||||||| || || || || || |||||||| || |||| |||||| ||||| || |||||||||||||| |||||    
T  54968420 cattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttgtgcaaaccattgcgtacat 54968513  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 796059 - 796139
Alignment:
Q  19 ttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||||| || | |||||||||||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||    
T  796059 ttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcatacatc 796139  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 8273729 - 8273649
Alignment:
Q  19 ttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacatc 99  Q
    ||||||||||| || | |||||||||||||||||| ||||||||  |||| |||||||| || ||||||||||||||||||    
T  8273729 ttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcatacatc 8273649  T

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Target: scaffold0479 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 1727 - 1634
Alignment:
Q  5 cattccaatgttccttacctggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctagtgcaaaccattgcatacat 98  Q
    |||||||||| || || |||||||| || || || || || |||||||| || |||| |||||| ||||| || |||||||||||||| |||||    
T  1727 cattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttgtgcaaaccattgcgtacat 1634  T

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