View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10945_low_6 (Length: 253)

Name: NF10945_low_6
Description: NF10945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10945_low_6
NF10945_low_6
[»] chr8 (5 HSPs)
chr8 (19-243)||(34866623-34866847)
chr8 (57-243)||(34389579-34389765)
chr8 (105-248)||(10551685-10551828)
chr8 (124-234)||(9519017-9519127)
chr8 (106-211)||(37987529-37987634)
[»] chr1 (6 HSPs)
chr1 (62-243)||(41919796-41919977)
chr1 (74-243)||(24685075-24685243)
chr1 (129-232)||(17032835-17032939)
chr1 (87-248)||(4651145-4651304)
chr1 (159-248)||(31586262-31586351)
chr1 (174-226)||(24450450-24450501)
[»] chr7 (6 HSPs)
chr7 (62-243)||(38305574-38305755)
chr7 (103-237)||(3420231-3420365)
chr7 (128-232)||(47326447-47326551)
chr7 (87-228)||(38484915-38485055)
chr7 (129-228)||(37792712-37792811)
chr7 (172-228)||(12480298-12480355)
[»] chr4 (8 HSPs)
chr4 (62-243)||(30963777-30963958)
chr4 (130-243)||(16501154-16501267)
chr4 (127-234)||(31051226-31051333)
chr4 (87-206)||(35799957-35800076)
chr4 (172-226)||(46699512-46699566)
chr4 (185-223)||(4305075-4305113)
chr4 (158-211)||(38929125-38929178)
chr4 (187-223)||(7702937-7702973)
[»] chr3 (4 HSPs)
chr3 (74-246)||(19175830-19176001)
chr3 (127-248)||(1653477-1653598)
chr3 (87-232)||(20611145-20611289)
chr3 (151-232)||(17501810-17501891)
[»] chr6 (4 HSPs)
chr6 (52-243)||(16510854-16511045)
chr6 (147-228)||(12793536-12793617)
chr6 (18-47)||(16511068-16511097)
chr6 (200-228)||(9223377-9223405)
[»] chr2 (6 HSPs)
chr2 (64-232)||(39339408-39339574)
chr2 (149-238)||(31902955-31903044)
chr2 (153-213)||(2062247-2062307)
chr2 (159-228)||(22886068-22886137)
chr2 (127-234)||(27739128-27739235)
chr2 (163-228)||(29486398-29486463)
[»] chr5 (2 HSPs)
chr5 (127-226)||(27712379-27712478)
chr5 (106-211)||(697664-697769)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 34866847 - 34866623
Alignment:
Q  19 agtttaggttgtgtggtggtggtgatgtgagtaggttgcgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  34866847 agtttaggttgtgtggtggtggtgatgtgagtaggttgcgggtagtgttgttcaaatccgccatttttgctccaccattgattctcttttactacggcga 34866748  T
Q  119 cgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttc 218  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  34866747 cgaaaacattctccttgtcacaggcgaccgcctttttatgacctgggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttc 34866648  T
Q  219 gtcttcctctagatttatgtctgtg 243  Q
    ||||||||||| |||||||| ||||    
T  34866647 gtcttcctctaaatttatgtttgtg 34866623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 34389765 - 34389579
Alignment:
Q  57 cgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgccttttta 156  Q
    |||| |||||| |||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||| ||||| || | |    
T  34389765 cgggaagtgttattcagatctgccgtttttgctccaccattggttctcttttactacggcgacgaacacattctccttgtcacaggcagccgctttgtca 34389666  T
Q  157 tgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtg 243  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||||||| | |||||||| |||||||||||||||| ||||    
T  34389665 tgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagatttatgtttgtg 34389579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 10551685 - 10551828
Alignment:
Q  105 ttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttt 204  Q
    ||||||| ||||||| || |  ||||||||||||| | || | |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||| ||    
T  10551685 ttttactccggtgacaaatgtcttctccttgtcaccgacgacagcctttttatgatcggggtcgtgtttccgcttcaaatcggcgtcgctgcccgtgctt 10551784  T
Q  205 tgttgttggatttcgtcttcctctagatttatgtctgtgctgct 248  Q
    ||||||||| |||||||||||||||||| ||||| |||| ||||    
T  10551785 tgttgttgggtttcgtcttcctctagatctatgtttgtgttgct 10551828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 9519017 - 9519127
Alignment:
Q  124 gcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtctt 223  Q
    ||||||||||||||| ||| |||  | || |||  || ||||||||| | |||||||||| | |||||||| |||||||||||||||||| |||||||||    
T  9519017 gcattctccttgtcaaaggtggcaacattgttactatttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctt 9519116  T
Q  224 cctctagattt 234  Q
     ||||||||||    
T  9519117 tctctagattt 9519127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 37987634 - 37987529
Alignment:
Q  106 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 205  Q
    |||||| ||||| || |||| ||||||||||||| |||||  || | |||| ||||| ||||| | |||||||||| | |||||||||| |||||||| |    
T  37987634 tttacttcggtgccggaagccttctccttgtcaccggcgggtgcgtgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgttat 37987535  T
Q  206 gttgtt 211  Q
    ||||||    
T  37987534 gttgtt 37987529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 41919796 - 41919977
Alignment:
Q  62 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 161  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||  ||||||||||||||||||| |||||| ||| ||||||    
T  41919796 agtgttgttcagatccgccgtttttgctccaccattggttctcttttactacggcaacgaacacattctccttgtcacaggctgccgccatttaatgatc 41919895  T
Q  162 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtg 243  Q
    |||||||||||||||||||||| | |||||| | ||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  41919896 tgggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagatttatgtttgtg 41919977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 24685243 - 24685075
Alignment:
Q  74 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 173  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||||||  |||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  24685243 atccgccatttttgctccaccattggttct-ttttactacggcgacgaacacattctccttgtcacaggcggccagctttttatgatatgggttgtggtt 24685145  T
Q  174 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtg 243  Q
    | |||||||| |||||||||| ||||||||||||||||| |||| ||||  || ||||||||||| ||||    
T  24685144 ctgcttcaaaccggcgtcgctgcccgtgttttgttgttgaattttgtctctctttagatttatgtttgtg 24685075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 17032835 - 17032939
Alignment:
Q  129 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt-gttgttggatttcgtcttcctc 227  Q
    ||||||||||| ||||||| | ||||| ||||| |||||||| ||| |||||| | ||| ||| || || ||||||| ||||||||||||||||||||||    
T  17032835 ctccttgtcaccggcggccacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctc 17032934  T
Q  228 tagat 232  Q
    |||||    
T  17032935 tagat 17032939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 4651145 - 4651304
Alignment:
Q  87 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 186  Q
    ||||||||||||||||||||||||| ||| |||  | |  |||||||| |||| | |||| |||||||||  ||| | |||||  |||||||||||| ||    
T  4651145 gctccaccattgattctcttttactccggcgacagatgtcttctccttatcactgacggctgcctttttacaatcggagttgt--ttccgcttcaaaccg 4651242  T
Q  187 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgctgct 248  Q
    | |||||| |  ||||||||||||| | |||||||||||||  ||| ||||| |||| ||||    
T  4651243 gtgtcgctgcttgtgttttgttgttaggtttcgtcttcctcatgatctatgtttgtgttgct 4651304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 31586351 - 31586262
Alignment:
Q  159 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgctgct 248  Q
    |||||||| ||| | |||||||| | |||||||||| |||||||||||||||||| ||||||||| |||| ||||| |||| ||| ||||    
T  31586351 atctgggtcgtgttcccgcttcagaccggcgtcgctgcccgtgttttgttgttgggtttcgtctttctctggatttgtgtcagtgttgct 31586262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 24450501 - 24450450
Alignment:
Q  174 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 226  Q
    |||||||||| | |||||||| |||||||||||||||||| |||| |||||||    
T  24450501 ccgcttcaaa-ctgcgtcgctgcccgtgttttgttgttgggtttcatcttcct 24450450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 38305574 - 38305755
Alignment:
Q  62 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 161  Q
    |||| |||||| |||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||| ||||||||| |||||||||||  |||||     
T  38305574 agtgctgttcatatccgccgtttttgctccaccattggctctcttttactacggcgacgaacgcattctcgttgtcacagtcggccgcctttaaatgata 38305673  T
Q  162 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtg 243  Q
    |||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||||    
T  38305674 tgggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagattgatgtttgtg 38305755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 3420365 - 3420231
Alignment:
Q  103 tcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgt 202  Q
    ||||||||||||| |||||| ||||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||| || |||||||||| | |||||    
T  3420365 tcttttactacggcgacgaacgcattctccctgttacaggagaccgcctttttatgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgt 3420266  T
Q  203 tttgttgttggatttcgtcttcctctagatttatg 237  Q
    ||||||||| | ||||||||||||||| |||||||    
T  3420265 tttgttgtttggtttcgtcttcctctaaatttatg 3420231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 47326551 - 47326447
Alignment:
Q  128 tctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctc 227  Q
    |||||||||||| ||||||||||||| |||||| | ||||||| || | ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  228 tagat 232  Q
    |||||    
T  47326451 tagat 47326447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 38484915 - 38485055
Alignment:
Q  87 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 186  Q
    |||||||||||| |||| ||||||| ||| |||  | |  ||||||||||||| | ||||| |||||||| |||  |||||||| |||||||||||| ||    
T  38484915 gctccaccattgtttctattttactccggcgacagatgtcttctccttgtcactgacggccacctttttacgatg-gggttgtgtttccgcttcaaaccg 38485013  T
Q  187 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 228  Q
    |||||||| ||| |||||||||||  | ||||||||||||||    
T  38485014 gcgtcgctgcccatgttttgttgtcaggtttcgtcttcctct 38485055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 37792712 - 37792811
Alignment:
Q  129 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 228  Q
    ||||||||||| ||||   ||||||||| ||| ||||||||| |||||||||||| |||||||| |  |||||||||| |||||| |||| |||| ||||    
T  37792712 ctccttgtcaccggcgattgcctttttacgatatgggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctct 37792811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 12480298 - 12480355
Alignment:
Q  172 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttc-gtcttcctct 228  Q
    |||| ||||||| |||||||||| | |||||||||||||||| |||| ||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct 12480355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 30963777 - 30963958
Alignment:
Q  62 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 161  Q
    |||| |||||| ||||||||||||| ||||||||||| ||||||||||||||   |||||| ||||||||||||||||||||| ||  ||||||||||||    
T  30963777 agtgctgttcagatccgccgttttttctccaccattggttctcttttactacaacgacgaacgcattctccttgtcacaggcgaccatctttttatgatc 30963876  T
Q  162 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtg 243  Q
    |||||||||||||| ||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  30963877 tgggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagatttatgtttgtg 30963958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 16501154 - 16501267
Alignment:
Q  130 tccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctcta 229  Q
    |||||||||| |||||||| |||| || ||| ||||||||| |||| ||||||| |||||||||| ||| |||| ||||||||| ||| |||||||||||    
T  16501154 tccttgtcaccggcggccgtctttatacgatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctcta 16501253  T
Q  230 gatttatgtctgtg 243  Q
     |||| ||| ||||    
T  16501254 aatttgtgtttgtg 16501267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 31051333 - 31051226
Alignment:
Q  127 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 226  Q
    |||||||||| |  || ||||||||||||| ||| |||||||||  ||||||||| | |||||||||| |||||||||||||||||| || | |||||||    
T  31051333 ttctccttgttatcggtggccgcctttttacgatttgggttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttacatcttcct 31051234  T
Q  227 ctagattt 234  Q
     |||||||    
T  31051233 ttagattt 31051226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 35799957 - 35800076
Alignment:
Q  87 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 186  Q
    |||||||||||| ||||||| |||| |||||||| | || |||||||||| || | || ||||||||||| | | |||||| || ||||| |||||||||    
T  35799957 gctccaccattggttctcttgtactccggtgacggacgccttctccttgttaccgacgaccgcctttttacgttatgggttatgtttccgtttcaaatcg 35800056  T
Q  187 gcgtcgcttcccgtgttttg 206  Q
    |||||| | |||||||||||    
T  35800057 gcgtcgttgcccgtgttttg 35800076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 46699566 - 46699512
Alignment:
Q  172 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 226  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||    
T  46699566 ttccgcttcaaatcggcgtcgctgcccgtgtattgttgttggaattcatcttcct 46699512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 4305075 - 4305113
Alignment:
Q  185 cggcgtcgcttcccgtgttttgttgttggatttcgtctt 223  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  4305075 cggcgtcgctgcccgtgttttgttgttggatttcgtctt 4305113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 38929125 - 38929178
Alignment:
Q  158 gatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgtt 211  Q
    ||||| ||||||| |||||||||| | ||||||| || ||||||||||||||||    
T  38929125 gatctaggttgtgtttccgcttcagaccggcgtcactgcccgtgttttgttgtt 38929178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 7702937 - 7702973
Alignment:
Q  187 gcgtcgcttcccgtgttttgttgttggatttcgtctt 223  Q
    |||||||| || |||||||||||||||||||||||||    
T  7702937 gcgtcgctgcctgtgttttgttgttggatttcgtctt 7702973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 246
Target Start/End: Original strand, 19175830 - 19176001
Alignment:
Q  74 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 173  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  19175830 atccgccgtttttgctccaccattggttct-ttttactacggcgacgaatgcattctccttgtcacaggcggctgcctttttatgatatgggttgtggtt 19175928  T
Q  174 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgctg 246  Q
    || ||||||| |||| ||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  19175929 cctcttcaaaccggcatcgctgcccgtgttttgttgttggattttgtctccctttagatttatgtttgtgctg 19176001  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 1653598 - 1653477
Alignment:
Q  127 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 226  Q
    ||||||||||||| ||||||  |||| ||| ||||||||||||  || ||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  1653598 ttctccttgtcactggcggcaaccttgttacgatctgggttgtcttttcgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcct 1653499  T
Q  227 ctagatttatgtctgtgctgct 248  Q
    | | |||||||| |||| ||||    
T  1653498 ccatatttatgtttgtgttgct 1653477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 232
Target Start/End: Original strand, 20611145 - 20611289
Alignment:
Q  87 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 186  Q
    |||||||||||| |||||||||||| ||  |||||| || | ||||||||||  ||||||||||||| |||||| | ||||||| || | ||||||| ||    
T  20611145 gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcatcggcggccgcctttctatgattttggttgtgctttcacttcaaaccg 20611243  T
Q  187 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagat 232  Q
     ||||||| | ||||||||||||||||||||| ||||| |||||||    
T  20611244 acgtcgctgctcgtgttttgttgttggatttcctcttcatctagat 20611289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 17501891 - 17501810
Alignment:
Q  151 tttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagat 232  Q
    |||||| ||||| ||||||| ||||||||||||  | ||||  |  ||||||||||||||| ||||||||||||||||||||    
T  17501891 tttttacgatctaggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagat 17501810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 16511045 - 16510854
Alignment:
Q  52 ggttgcgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcct 151  Q
    |||| |||| |||| |||||| | ||||||||||||||||||||||| |||||||||||||||| || |||  |||||||||||||||| ||| | ||||    
T  16511045 ggttccgggaagtgctgttcagaaccgccgtttttgctccaccattgtttctcttttactacggagatgaacacattctccttgtcacaagcgactgcct 16510946  T
Q  152 ttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtg 243  Q
    ||||||||| ||||||||||||| |||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  16510945 ttttatgatatgggttgtggttctgcttcaaaccggcatcgctgcccgtgttttgttgttggatgtcgtcttcctctagatttatgtttgtg 16510854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 12793536 - 12793617
Alignment:
Q  147 cgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 228  Q
    |||||||||| ||| ||||||||| || |||||||||  ||||||| | ||||||||||| || ||||||||||||||||||    
T  12793536 cgcctttttacgatatgggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctct 12793617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 16511097 - 16511068
Alignment:
Q  18 cagtttaggttgtgtggtggtggtgatgtg 47  Q
    ||||||||||||||||||||||||||||||    
T  16511097 cagtttaggttgtgtggtggtggtgatgtg 16511068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 9223377 - 9223405
Alignment:
Q  200 tgttttgttgttggatttcgtcttcctct 228  Q
    |||||||||||||||||||||||||||||    
T  9223377 tgttttgttgttggatttcgtcttcctct 9223405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 39339574 - 39339408
Alignment:
Q  64 tgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctg 163  Q
    ||||||||| ||||||||||   |||||||||||| |||||||||||| ||  |||||| || | ||||||||||| ||||||||||||| |||||| |     
T  39339574 tgttgttcagatccgccgttac-gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcaccggcggccgcctttctatgatttt 39339477  T
Q  164 ggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagat 232  Q
    ||||||| || | ||||||| || ||||||| | ||||||||||||||||||||| |||||||||||||    
T  39339476 ggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctctagat 39339408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 31903044 - 31902955
Alignment:
Q  149 cctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgt 238  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  31903044 cctttttatgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgt 31902955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 2062247 - 2062307
Alignment:
Q  153 tttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttgg 213  Q
    |||| ||||||||||||| |||||||||| | |||||||||| ||||||||||||||||||    
T  2062247 tttacgatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgttgg 2062307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 22886137 - 22886068
Alignment:
Q  159 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 228  Q
    ||||||||| || |||||||||| |  |||||||||  ||||||||||||||||| |||| |||||||||    
T  22886137 atctgggttttgtttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctct 22886068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 27739128 - 27739235
Alignment:
Q  127 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 226  Q
    |||| ||||||||  | |||| |||||||  |||||| |||||| ||||||||||   || ||||||| || ||||||||||||| | |||| |||||||    
T  27739128 ttcttcttgtcactagtggccaccttttttcgatctgcgttgtgtttccgcttcagggcgacgtcgctgcctgtgttttgttgtttggtttcatcttcct 27739227  T
Q  227 ctagattt 234  Q
    || |||||    
T  27739228 cttgattt 27739235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 29486398 - 29486463
Alignment:
Q  163 gggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 228  Q
    |||||||| |||||||||| | |||||||||| |||  ||||||||||| | |||||||| |||||    
T  29486398 gggttgtgtttccgcttcagaccggcgtcgctgcccaagttttgttgtttggtttcgtctccctct 29486463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 27712379 - 27712478
Alignment:
Q  127 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 226  Q
    ||||||||||||| || ||  |||| |||| ||||| | ||||| |||  ||||| | |||||||| | |||||||||||||||||| |||| |||||||    
T  27712379 ttctccttgtcaccggtggttgcctgtttacgatctagattgtgtttctacttcagaccggcgtcgttgcccgtgttttgttgttgggtttcatcttcct 27712478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 697664 - 697769
Alignment:
Q  106 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 205  Q
    |||||| ||||| || |||| ||||||||||||| |||    |||| |||| ||||| ||||| | |||||||||| | |||||||||| |||||||  |    
T  697664 tttacttcggtgccggaagccttctccttgtcactggcatgtgcctgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgtgct 697763  T
Q  206 gttgtt 211  Q
    ||||||    
T  697764 gttgtt 697769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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