View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10946_low_3 (Length: 249)

Name: NF10946_low_3
Description: NF10946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10946_low_3
NF10946_low_3
[»] chr3 (10 HSPs)
chr3 (1-238)||(36313330-36313567)
chr3 (1-231)||(36325708-36325938)
chr3 (1-238)||(36327572-36327809)
chr3 (1-153)||(36336101-36336253)
chr3 (1-86)||(36333397-36333482)
chr3 (1-70)||(36320728-36320797)
chr3 (106-162)||(36320836-36320892)
chr3 (106-238)||(36333508-36333638)
chr3 (94-157)||(36309326-36309389)
chr3 (185-238)||(36336285-36336338)
[»] chr5 (1 HSPs)
chr5 (107-237)||(16053144-16053274)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36313330 - 36313567
Alignment:
Q  1 tgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagatgtaaaccttgaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36313330 tgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagatgtaaaccttgaatt 36313429  T
Q  101 tacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36313430 tacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgc 36313529  T
Q  201 ggaagctttctcacagcttcactaaatccttcatctgt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36313530 ggaagctttctcacagcttcactaaatccttcatctgt 36313567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 36325708 - 36325938
Alignment:
Q  1 tgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagatgtaaaccttgaatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |||| ||| | ||||| |         
T  36325708 tgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaataacaaaagccattttatcagattcacgagaagcaaaccatcctac 36325807  T
Q  101 tacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgc 200  Q
    |  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||   |||||||||  |||||||||| ||| ||    
T  36325808 tgaaaatttaagcgatttcaaaagagggcaagatcgaccaagggcttcaagagagacctcagttagataagaatgtgaaatgtcaaccttctctaacagc 36325907  T
Q  201 ggaagctttctcacagcttcactaaatcctt 231  Q
    |||||||||||||  ||||||||||||||||    
T  36325908 ggaagctttctcaaggcttcactaaatcctt 36325938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36327572 - 36327809
Alignment:
Q  1 tgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagatgtaaaccttgaatt 100  Q
    |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||| | |  |    ||     
T  36327572 tgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaagat-tcatgcgaccatg 36327670  T
Q  101 tacaa-atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccg 199  Q
     |||| ||||||| |||||||||||||||||  | ||||| ||||||| |||||| ||||| ||||||| |  |||||||||  ||| |||||||||  |    
T  36327671 aacaatatttaagggatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattg 36327770  T
Q  200 cggaagctttctcacagcttcactaaatccttcatctgt 238  Q
     |||||||||||||  |||||| ||||||||||||||||    
T  36327771 tggaagctttctcatggcttcagtaaatccttcatctgt 36327809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 36336101 - 36336253
Alignment:
Q  1 tgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagatgtaa---accttga 97  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||  ||| |||||||||||||||||||   ||   | | |||    
T  36336101 tgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataagaaacgccattttatcagagtcacaagagtcaagcgagcatga 36336200  T
Q  98 atttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagag 153  Q
    |||   | | | |||| |||||||||||||||| ||||||||||||||||||||||    
T  36336201 att---atactgaagccatttcaaaagagggcaagatcgaccaagggcttcaagag 36336253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36333397 - 36333482
Alignment:
Q  1 tgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagat 86  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| ||||||||||||| ||||||    
T  36333397 tgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttatcagagtcgcaagat 36333482  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36320728 - 36320797
Alignment:
Q  1 tgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgtttt 70  Q
    |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| ||||    
T  36320728 tgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccatttt 36320797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 36320836 - 36320892
Alignment:
Q  106 atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcag 162  Q
    |||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  36320836 atttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagagacctcag 36320892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 36333508 - 36333638
Alignment:
Q  106 atttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaag 205  Q
    |||||||| ||||||||||| |||| |||||||||||  ||||||||||  |||| |||||  ||  || ||||||  | || ||||||||| | |||||    
T  36333508 atttaagcaatttcaaaagatggcaagatcgaccaagaacttcaagaga--catcggttagacagcaatatgaaatgtccactttctccaactgtggaag 36333605  T
Q  206 ctttctcacagcttcactaaatccttcatctgt 238  Q
    ||||||||  |||| || |||||||| ||||||    
T  36333606 ctttctcatggctttaccaaatcctttatctgt 36333638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 36309326 - 36309389
Alignment:
Q  94 ttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagac 157  Q
    |||| ||| |||||| |||||| |||||||||||||| |||||||||||  ||||||| |||||    
T  36309326 ttgattttccaaattcaagcgacttcaaaagagggcaagatcgaccaagcacttcaagggagac 36309389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 36336285 - 36336338
Alignment:
Q  185 aaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgt 238  Q
    ||||||||| ||||||||||||||||| ||| | ||||| ||| ||||||||||    
T  36336285 aaccttctctaaccgcggaagctttctaacaacatcactgaattcttcatctgt 36336338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 16053144 - 16053274
Alignment:
Q  107 tttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagc 206  Q
    |||||| ||||||||||||||||| ||||| |||||| || ||| ||| || ||||||||   || || |||||| |||| |||||| ||| ||||||||    
T  16053144 tttaagtgatttcaaaagagggcaagatcggccaaggactgcaatagatacctcagttagcctgttatctgaaatgacaagcttctctaacagcggaagc 16053243  T
Q  207 tttctcacagcttcactaaatccttcatctg 237  Q
    || ||||||||||||||||||||||| ||||    
T  16053244 ttcctcacagcttcactaaatccttcttctg 16053274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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