View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10946_low_4 (Length: 237)
Name: NF10946_low_4
Description: NF10946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10946_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 35991907 - 35991704
Alignment:
| Q |
25 |
tagtatccaccagcatattcttgcatgcatgagatcaaacagaggaaactagaaaaggaatggaaaagaattatgccttccatatgaatggaatttactt |
124 |
Q |
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| T |
35991907 |
tagtatccaccagcatattcttgcatgcatgagatcaaacagaggaaactagaaaaggaatggaaaagaattatgccttccatatgaatggaatttactt |
35991808 |
T |
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| Q |
125 |
ttgttacaaaccattttgtagaaagttgcaaggattctcaaagtaaatatatataaaagtactaaaagtgaaagcagtaagagggataccaaaggcacaa |
224 |
Q |
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| T |
35991807 |
ttgttataaacccttttgtagaaagttgcaaggattctcaaagtaaatatatataaaagtactaaaagtgaaagcggtaagagggataccaaaggcacaa |
35991708 |
T |
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| Q |
225 |
gatg |
228 |
Q |
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|||| |
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| T |
35991707 |
gatg |
35991704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 35995442 - 35995321
Alignment:
| Q |
5 |
gactgagatgaagaaaacactagtatccaccagcatattcttgcatgcatgagatcaaacagaggaaactagaaaaggaatggaaaagaattatgccttc |
104 |
Q |
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| T |
35995442 |
gactgaaatggagaagacactagtatccaccagcatattcttgcatgcatgagatcaaacagaggaaactagaagaggaatggaaaagaattatgccttc |
35995343 |
T |
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| Q |
105 |
catatgaatggaatttactttt |
126 |
Q |
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| T |
35995342 |
catatgaatggaatttactttt |
35995321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 35981071 - 35980991
Alignment:
| Q |
69 |
gaaactagaaaaggaatggaaaagaattatgccttccatatgaatggaatttacttttgttacaaaccattt-tgtagaaa |
148 |
Q |
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| T |
35981071 |
gaaactagaagaggaacggaaaagaattatgccttccatgtgagtggaattaactttttccacaaaccatttatgtagaaa |
35980991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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