View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10947_high_2 (Length: 352)
Name: NF10947_high_2
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10947_high_2 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 27433130 - 27433482
Alignment:
| Q |
1 |
catacaaatgcaaaatacgttcatattagaagagcaaatgaatttattaaccacatgaagaggaataaaaataagctaaatgaattaatttattaactat |
100 |
Q |
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| T |
27433130 |
catacaaatgcaaaatacgttcatattagaagagcaaatgaatttattaaccacatgaagaggaataaaa-taagctaaatgaattaatttattaactat |
27433228 |
T |
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| Q |
101 |
atggaaaattaatgtagttgaatgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttgga |
200 |
Q |
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| T |
27433229 |
atggaaaattaatgtagttgaatgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttgga |
27433328 |
T |
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| Q |
201 |
tatgacttgattaatcttgttttgcaggcttgtgaatattggtgcaatattttctctttcaattgtagtttttctgtttagtgattgatgaaattg--ct |
298 |
Q |
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| T |
27433329 |
tatgacttgattaatcttgttttgcaggcttgtgaatattggtgcaatattttctctttcaattgtagtttttctgtttggtgattgatgaaattgctct |
27433428 |
T |
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| Q |
299 |
ctgtttcttgacatatatatagcctactatggatggtttgaatcttaattcaac |
352 |
Q |
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| T |
27433429 |
ctgcttcttgacatatatatagcctactatggatggtttgaatcttaattcaac |
27433482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27208050 - 27208246
Alignment:
| Q |
1 |
catacaaatgcaaaatacgttcatattagaagagcaaatgaatttattaaccacatgaagaggaataaaaataagctaaatgaattaatttattaactat |
100 |
Q |
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| T |
27208050 |
catacaaatgaaaaatacgttcatattagaagagcaaatgaatttattaaccacatgaagagaaat-aaactaagctaaatgaattaatggattaactat |
27208148 |
T |
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| Q |
101 |
atggaaaattaatgtagttgaatgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttgga |
200 |
Q |
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| T |
27208149 |
atggaaaattaatgtagt----tgagtactgatatata-taccatagaagaggaatgcaaagctaaagcataaagcaacacggttgcacttcattttgga |
27208243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 27455283 - 27455396
Alignment:
| Q |
6 |
aaatgcaaaatacgttcatattagaagagcaaatgaatttattaaccacatgaagaggaataaaaataagctaaatgaattaatttattaactatatgga |
105 |
Q |
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| T |
27455283 |
aaatgcaaaatatgtttatattatcagagcaaatgaatttattaaccacatgaagagcaat-aaactaagctaaatgaattaattgatttactatatgga |
27455381 |
T |
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| Q |
106 |
aaattaatgtagttg |
120 |
Q |
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| T |
27455382 |
aaattaatgtagttg |
27455396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 27443363 - 27443247
Alignment:
| Q |
123 |
tgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgacttgattaatcttgttt |
222 |
Q |
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| T |
27443363 |
tgagtagtgatatatat-accatagaagaggaatgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggcttgatgaatcttgttt |
27443265 |
T |
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| Q |
223 |
tgcaggcttgtgaatatt |
240 |
Q |
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| T |
27443264 |
tgcaggcttgtgaatatt |
27443247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 20952777 - 20952851
Alignment:
| Q |
46 |
attaaccacatgaagaggaataaaaataagctaaatgaattaatttattaactatatggaaaattaatgtagttga |
121 |
Q |
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| T |
20952777 |
attaaccgcatgaagagggataaac-taagctaaatgaattaatttattaactatatggaaaattagtgtagttga |
20952851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 27221442 - 27221596
Alignment:
| Q |
87 |
aatttattaactatatggaaaattaatgtagttgaatgagtactgatatatat---taccatagaagaggaatgccaagctaaagcataaagcaacatgg |
183 |
Q |
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| T |
27221442 |
aattgattaattatatggaaaattaatgtagtt--atg--tattgatatatgtacgtaccatagaagaggaatgcaaaactaaggcatagagcaacgcgg |
27221537 |
T |
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| Q |
184 |
gtgttcttcattttggatatgactt--gattaatcttgttttgcaggcttgtgaatatt |
240 |
Q |
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| T |
27221538 |
gtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaatatt |
27221596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 27215480 - 27215633
Alignment:
| Q |
87 |
aatttattaactatatggaaaattaatgtagttgaatgagtactgatatatat---taccatagaagaggaatgccaagctaaagcataaagcaacatgg |
183 |
Q |
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| T |
27215480 |
aattgattaattatatggaaaattaatgtagtt--atg--tattgatatatgtacgtaccgtagaagaggaatgcaaaactaaggcacagagcaacacgg |
27215575 |
T |
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| Q |
184 |
gtgttcttcattttggatatgactt--gattaatcttgttttgcaggcttgtgaatat |
239 |
Q |
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| T |
27215576 |
gtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatat |
27215633 |
T |
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