View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10947_low_1 (Length: 370)
Name: NF10947_low_1
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10947_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 26511492 - 26511811
Alignment:
| Q |
17 |
agaaacaactagagacgtggatgtgatttgttttgttttgttgcatgttataagataatagaaatattgaaaaatctacatagcataaaaaagttgtggc |
116 |
Q |
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| T |
26511492 |
agaaacaactagagacgtggatgtgatttgttttgttttgttgcatgttataagataatagaaatattgaaaaatctacatagcataaaaaagttgtggc |
26511591 |
T |
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| Q |
117 |
tgcaaattctctacaaattttcatgtatcccccactcaaccaatcctcgtcatttgttctaatctctctctccttggacctttgtctcagtgtcactatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26511592 |
tgcaaattctctacaaattttcatgtatcccccactcaaccaatcctcgtcatttgttctaatctctctctccttggacctttgtctcagtgtcactatt |
26511691 |
T |
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| Q |
217 |
ttctcattgcaacttgagtgnnnnnnnnnnnnncaaccaaatttagaatttcttggaaaacaaaactactcttaaagttatgctatatttttggaaaagg |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26511692 |
ttctcattgcaacttgagtgaaaaatcaaaaaacaaccaaatttagaatttcttggaaaacaaaactactcttaaagttatgctatatttttggaaaagg |
26511791 |
T |
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| Q |
317 |
ataatttattaaactctgca |
336 |
Q |
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|||||||||||||||||||| |
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| T |
26511792 |
ataatttattaaactctgca |
26511811 |
T |
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