View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10947_low_10 (Length: 251)
Name: NF10947_low_10
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10947_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 6526838 - 6527071
Alignment:
| Q |
18 |
aaaggaatcgacaatttacagatagagtcaaagctcccagcatgtgaataggtgcattacagttttgccatagttgccattgttacacaatgcaagttgc |
117 |
Q |
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| T |
6526838 |
aaaggaatcgacaatttacagatagagtcaaacctcccagcatgtgaataggtgcattacagttttgccatagttgccattgttacacaatgcaagttgc |
6526937 |
T |
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| Q |
118 |
atcactgctttacaatttcaatgttctatatagtatttaaaaaagacatctcttctgtagagtgacaggtagaaaattaattaaatacataatcaacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6526938 |
atcactgctttacaatttcaatgttctatatagtatttaaaaaagacatctcttctgtagagtgacaggtagaaaattaattaaatacataatcaacaat |
6527037 |
T |
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| Q |
218 |
cttacattacctttttcaagatttttatttaatt |
251 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6527038 |
cttacattacctttttcaagatttttatttaatt |
6527071 |
T |
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