View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10947_low_14 (Length: 239)
Name: NF10947_low_14
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10947_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 2347663 - 2347538
Alignment:
| Q |
97 |
aaattctacactaccatgtggtaaagatccacttttggtgggtggttaatttaaaaatccaaacataatgatattaatatttagccgcccctctctcatc |
196 |
Q |
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| T |
2347663 |
aaattctacactaccatgtggtaaagatccacttttggtgggtggttaatttaaaaatccaaacataatgatattaatatttagccgcccctctctcatc |
2347564 |
T |
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| Q |
197 |
atcttcattctactttggtcatctattt |
224 |
Q |
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|||| |||| || ||||||||||||| |
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| T |
2347563 |
atctctattcaac--tggtcatctattt |
2347538 |
T |
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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2347799 - 2347701
Alignment:
| Q |
1 |
cctggttctcataaacatagctcaatttataaagataatacatcgtaatacgaaagagttgacgtttgaattcgaaatttctcctttattcatcttaaa |
99 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2347799 |
cctggttctcgtaaacatagctcaatttataaagataatacatcgtaatacgaaagagttgacgtttgaattcgaaatttctcctttattcatcttaaa |
2347701 |
T |
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