View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10947_low_16 (Length: 222)
Name: NF10947_low_16
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10947_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 56436748 - 56436925
Alignment:
| Q |
12 |
gagatgaaggggggtccacctgatgttattgtgaacagcgcaggtactatcaacaagaacaacaagatgtgggaagttccttctcaagagtttgatttgg |
111 |
Q |
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| T |
56436748 |
gagatgaaggggggtccacctgatgttattgtgaacagcgcaggtactatcaacaagaacaacaagatgtgggaagttccttctcaagagtttgatttgg |
56436847 |
T |
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| Q |
112 |
tgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcatccctctcatgatcaacaatggaggaggag |
189 |
Q |
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| T |
56436848 |
tgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcatccctctcatgatcaacaatggaggaggag |
56436925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 26560811 - 26560723
Alignment:
| Q |
63 |
aacaagaacaacaagatgtgggaagttccttctcaagagtttgatttggtgatggatacaaacttgaaaggaactgccaatgtgttgag |
151 |
Q |
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| T |
26560811 |
aacaagaacaacaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaatgtgttgag |
26560723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 24890270 - 24890160
Alignment:
| Q |
63 |
aacaagaacaacaagatgtgggaagttccttctcaagagtttgatttggtgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcatcc |
162 |
Q |
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| T |
24890270 |
aacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatgtgttgaggcacttcattc |
24890171 |
T |
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| Q |
163 |
ctctcatgatc |
173 |
Q |
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| T |
24890170 |
ctctaatgatc |
24890160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 26562803 - 26562900
Alignment:
| Q |
63 |
aacaagaacaacaagatgtgggaagttccttctcaagagtttgatttggtgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcat |
160 |
Q |
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| T |
26562803 |
aacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgatggataccaacttgaaaggtaatgtcaatgtgttgaggcacttcat |
26562900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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