View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10947_low_3 (Length: 336)
Name: NF10947_low_3
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10947_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 37070654 - 37070336
Alignment:
| Q |
1 |
taagatgataaatcaaaaggataagaaaggagatactcctttgcatctggctgcaaaatcgtgtcatcccaaaactgttttttacttaacatgggatgaa |
100 |
Q |
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| T |
37070654 |
taagatgataaatcaaaaggataagaaaggagatactcctttgcatctggctgcaaaatcgtgtcatcccaaaactgttttttacttaacatgggatgaa |
37070555 |
T |
|
| Q |
101 |
agagtggatcttcatctggttaaccaaaacaatcaaacagctcttgaatttgtcaatgcaatttctcaatttcgtgatacatccacaagagaggtaagtg |
200 |
Q |
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| T |
37070554 |
agagtggatcttcatctggttaaccaaaacaatcaaacagctcttgaatttgtcaatgcaatttctcaatttcgtgatacatccacaagagaggtaagtg |
37070455 |
T |
|
| Q |
201 |
taattgattttgacaggtttggatttttagaagtttactattcaactcatttttaactaaaattaatcaggacaaacaaatttcgttgaacttaaaagag |
300 |
Q |
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| T |
37070454 |
taattgattttgacaggtttggatttttagaagtttactattcaactcatttttaactcaaattaatcaggacaaacaaatttcgttgaacttaaaagag |
37070355 |
T |
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| Q |
301 |
tttaagatcaggaccattc |
319 |
Q |
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||||||||||||||||||| |
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| T |
37070354 |
tttaagatcaggaccattc |
37070336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 37080483 - 37080267
Alignment:
| Q |
5 |
atgataaatcaaaaggataagaaaggagatactcctttgcatctggctgcaaaatcgtgtcatcccaaaactgttttttacttaacatgggatgaaagag |
104 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
37080483 |
atgataaatcaaaaggataataaaggagatactcctttgcatctggctgcacaatcgtgtcatcctaaagctgttttttacttaacatgggatgaaagag |
37080384 |
T |
|
| Q |
105 |
tggatcttcatctggttaaccaaaacaatcaaacagctcttgaatttgtcaatgcaatttctcaatttcgtgatacatccacaagagaggtaagtgtaat |
204 |
Q |
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| T |
37080383 |
tggatatgcagctggttaaccaaaacaaccaaacagctgttgaagttatcaatgcaagttcaaaacttcgtaattcgtccgctagagaggtatgtagaat |
37080284 |
T |
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| Q |
205 |
tgattttgacaggtttg |
221 |
Q |
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|| |||||||| ||||| |
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| T |
37080283 |
tggttttgacatgtttg |
37080267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36953780 - 36953857
Alignment:
| Q |
1 |
taagatgataaatcaaaaggataagaaaggagatactcctttgcatctggctgcaaaatcgtgtcatcccaaaactgt |
78 |
Q |
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|||||||||||||||||| ||||| ||||||||||| ||||||||| |||| |||| ||| |||||||| | |||||| |
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| T |
36953780 |
taagatgataaatcaaaaagataataaaggagatacccctttgcatttggcagcaagatcatgtcatcctagaactgt |
36953857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 36953883 - 36953932
Alignment:
| Q |
98 |
gaaagagtggatcttcatctggttaaccaaaacaatcaaacagctcttga |
147 |
Q |
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||||||||| | ||| || ||||||||||||||||| ||||||||||||| |
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| T |
36953883 |
gaaagagtgaaacttaatttggttaaccaaaacaatgaaacagctcttga |
36953932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12494466 - 12494389
Alignment:
| Q |
1 |
taagatgataaatcaaaaggataagaaaggagatactcctttgcatctggctgcaaaatcgtgtcatcccaaaactgt |
78 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||| | ||| |||||||| | |||||| |
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| T |
12494466 |
taagatgataaatcaaaaagataataaaggagatacccctttgcatttggctgcgagatcatgtcatcctacaactgt |
12494389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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