View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10947_low_5 (Length: 285)
Name: NF10947_low_5
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10947_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 52721298 - 52721554
Alignment:
| Q |
9 |
cgagagagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52721298 |
cgagggagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacatgggttctcttcttggaatcacgatattggtt |
52721397 |
T |
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| Q |
109 |
tatgcacaagataaactagggtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721398 |
tatgcacaagataaactagggtggggttggggttttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc |
52721497 |
T |
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| Q |
209 |
gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcct |
265 |
Q |
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| T |
52721498 |
gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcct |
52721554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 52712477 - 52712733
Alignment:
| Q |
9 |
cgagagagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtt |
108 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
52712477 |
cgagggagatgaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcacgatattggtt |
52712576 |
T |
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| Q |
109 |
tatgcacaagataaactagggtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc |
208 |
Q |
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| T |
52712577 |
tatgcacaagataaactagggtggggttggggttttggaattcccacaataactacggttttatctatcgttgttctagctgccggtgttcggtattacc |
52712676 |
T |
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| Q |
209 |
gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcct |
265 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712677 |
gtttccaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcct |
52712733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 52698658 - 52698912
Alignment:
| Q |
9 |
cgagagagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtt |
108 |
Q |
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|||| |||||||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||| ||||| | ||||||||||| || |||||||| |
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| T |
52698658 |
cgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttcttggaattacactattggtt |
52698757 |
T |
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| Q |
109 |
tatgcacaagataaactagggtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc |
208 |
Q |
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||| |||| | || |||||||| |||||||| ||| | ||||||||||||||| | || ||||||||||| | | || | |||| ||| |||||| | |
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| T |
52698758 |
tatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggccgttggtattccgtattatc |
52698857 |
T |
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| Q |
209 |
gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagc |
263 |
Q |
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|||||||||| |||||||||||||| || |||||||||||||||||||||||||| |
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| T |
52698858 |
gttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagc |
52698912 |
T |
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