View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10947_low_8 (Length: 252)

Name: NF10947_low_8
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10947_low_8
NF10947_low_8
[»] chr5 (6 HSPs)
chr5 (70-238)||(6527223-6527392)
chr5 (130-220)||(37869536-37869626)
chr5 (140-218)||(21144018-21144095)
chr5 (163-219)||(31567827-31567883)
chr5 (1-71)||(6527111-6527184)
chr5 (140-220)||(20355240-20355319)
[»] chr2 (14 HSPs)
chr2 (140-230)||(16590632-16590721)
chr2 (140-230)||(42223241-42223330)
chr2 (140-219)||(31397455-31397533)
chr2 (166-220)||(11915214-11915268)
chr2 (145-230)||(11478052-11478136)
chr2 (164-219)||(31377745-31377800)
chr2 (164-219)||(31989549-31989604)
chr2 (159-209)||(18155311-18155361)
chr2 (140-189)||(13315905-13315955)
chr2 (140-230)||(35791180-35791269)
chr2 (103-188)||(41906012-41906096)
chr2 (140-189)||(16590507-16590555)
chr2 (167-220)||(24486596-24486649)
chr2 (155-191)||(11915091-11915127)
[»] chr4 (13 HSPs)
chr4 (140-228)||(49533250-49533337)
chr4 (144-230)||(16734267-16734351)
chr4 (140-220)||(49277722-49277801)
chr4 (86-230)||(8678828-8678974)
chr4 (146-218)||(21744927-21744998)
chr4 (140-230)||(8810094-8810183)
chr4 (140-229)||(9780387-9780475)
chr4 (140-220)||(5283826-5283905)
chr4 (140-191)||(25786226-25786276)
chr4 (159-220)||(13555677-13555739)
chr4 (159-200)||(9780545-9780586)
chr4 (103-188)||(16734103-16734186)
chr4 (140-228)||(16875932-16876019)
[»] chr1 (12 HSPs)
chr1 (140-230)||(33864237-33864326)
chr1 (140-230)||(33916596-33916685)
chr1 (141-217)||(7261516-7261591)
chr1 (140-230)||(13437033-13437122)
chr1 (140-218)||(22315205-22315282)
chr1 (79-228)||(5469510-5469660)
chr1 (83-189)||(33864051-33864158)
chr1 (83-189)||(33916764-33916871)
chr1 (164-219)||(22151971-22152026)
chr1 (143-220)||(44078724-44078800)
chr1 (164-228)||(24023226-24023289)
chr1 (166-230)||(25059885-25059949)
[»] chr3 (9 HSPs)
chr3 (90-230)||(25159045-25159183)
chr3 (103-230)||(55257663-55257788)
chr3 (140-230)||(5303666-5303755)
chr3 (140-220)||(7013224-7013303)
chr3 (140-220)||(18359290-18359369)
chr3 (140-220)||(43426431-43426510)
chr3 (125-200)||(25158833-25158906)
chr3 (164-219)||(30226296-30226351)
chr3 (140-230)||(7308224-7308313)
[»] chr8 (6 HSPs)
chr8 (140-230)||(9235503-9235592)
chr8 (140-230)||(23289066-23289155)
chr8 (140-228)||(13373235-13373322)
chr8 (164-219)||(8980747-8980802)
chr8 (135-200)||(13980022-13980086)
chr8 (164-228)||(11311303-11311367)
[»] chr7 (13 HSPs)
chr7 (140-230)||(2936182-2936271)
chr7 (140-230)||(42957419-42957508)
chr7 (159-231)||(43393923-43393995)
chr7 (140-230)||(1853314-1853403)
chr7 (103-188)||(27082756-27082838)
chr7 (103-188)||(27195463-27195545)
chr7 (140-229)||(24812949-24813037)
chr7 (159-220)||(9689300-9689362)
chr7 (140-230)||(19377106-19377196)
chr7 (140-230)||(25601793-25601882)
chr7 (167-228)||(22610128-22610189)
chr7 (140-200)||(1853161-1853219)
chr7 (140-200)||(10931951-10932009)
[»] chr6 (8 HSPs)
chr6 (164-230)||(25167069-25167135)
chr6 (131-220)||(33198574-33198662)
chr6 (140-188)||(3816714-3816761)
chr6 (140-220)||(9044625-9044704)
chr6 (164-220)||(9662912-9662968)
chr6 (167-230)||(20757621-20757684)
chr6 (163-229)||(6759741-6759807)
chr6 (140-229)||(334907-334994)
[»] scaffold0188 (1 HSPs)
scaffold0188 (140-230)||(13299-13389)
[»] scaffold0003 (2 HSPs)
scaffold0003 (164-219)||(306704-306759)
scaffold0003 (140-189)||(316492-316540)
[»] scaffold0258 (1 HSPs)
scaffold0258 (164-200)||(18724-18760)
[»] scaffold0004 (1 HSPs)
scaffold0004 (159-230)||(82363-82434)
[»] scaffold0067 (1 HSPs)
scaffold0067 (140-230)||(25896-25984)
[»] scaffold0110 (1 HSPs)
scaffold0110 (167-227)||(23194-23254)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 6527223 - 6527392
Alignment:
Q  70 tatgaaaggtaaaggattaatatat--gtttatcatgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgta 167  Q
    |||||||| ||||||||||||||||  |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||     
T  6527223 tatgaaagataaaggattaatatatatgtttatcatgtaatattagcaatttctagtttatcctcctttaataaaaattgtttagact-caaaccctgtg 6527321  T
Q  168 atttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcgatataccc 238  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  6527322 atttgaagattatttggttttggattttcatgacataaaattacaaaatttaacgtattttcggtataccc 6527392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 37869626 - 37869536
Alignment:
Q  130 ctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    ||||| ||| |||||||||||||| ||| |||| ||||||||||||||| |||| |||||||  |||||| ||| ||||||||||||||||    
T  37869626 ctcctgtaaaaaaaattgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaa 37869536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 21144018 - 21144095
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattt 218  Q
    |||||||||||||| ||| |||||||||||||||||||| |||| |||||||  |||||| ||| ||||||||||||||    
T  21144018 aaaaattgtttaga-ttccaaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaattt 21144095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 31567883 - 31567827
Alignment:
Q  163 ctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    |||||||||||||||| ||||||||||||  ||||||| || |||||||||||||||    
T  31567883 ctgtaatttgaagattttttggttttggaccttcatgatatcaaattacaaaattta 31567827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6527111 - 6527184
Alignment:
Q  1 tgtacgactcgtgctaaagaaaaatataaac---aagagnnnnnnnactcaagaaattattgaaaatcaaatta 71  Q
    ||||| |||||||||||||||||||||||||   |||||       ||||||||||||||||||||||||||||    
T  6527111 tgtacaactcgtgctaaagaaaaatataaacaaaaagagtttttttactcaagaaattattgaaaatcaaatta 6527184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 20355319 - 20355240
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||||| ||| || ||||||||||||||||| |||| ||||| |  || ||| ||| |||||| |||||||||    
T  20355319 aaaaattgtttaga-ttccaatcctgtaatttgaagattttttgattttgaaccttgatggcatcaaattaaaaaatttaa 20355240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 16590721 - 16590632
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||| | |||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| ||| |||||    
T  16590721 aaaaattgtttatatttcaaacc-tgtaatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaaggtactttcg 16590632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 42223330 - 42223241
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||| |||||||||||||||||||| |||| ||||| |  |||||| ||| |||||||||||||||| ||| |||||    
T  42223330 aaaaattgtttaga-ttccaaccctgtaatttgaagattttttgattttgaaccttcatggcatcaaattacaaaatttaaggtactttcg 42223241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 31397533 - 31397455
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    |||||||||||||| |  ||||| ||||||||||||||||||||||||||||  |||||||| | ||||| |||||||||    
T  31397533 aaaaattgtttagattgtaaacc-tgtaatttgaagattatttggttttggaccttcatgacgtcaaatttcaaaattta 31397455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 11915268 - 11915214
Alignment:
Q  166 taatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    ||||||||||||| ||||||||||||  |||||||||| ||||||||||||||||    
T  11915268 taatttgaagattttttggttttggaccttcatgacatcaaattacaaaatttaa 11915214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 11478052 - 11478136
Alignment:
Q  145 ttgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    ||||||||| ||||| |||||||||||||| ||| ||||||||||||  |||||  ||| |||||||||||||||| ||| |||||    
T  11478052 ttgtttagatttcaa-ccctgtaatttgaaaattctttggttttggaccttcatagcatcaaattacaaaatttaaggtactttcg 11478136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 31377800 - 31377745
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    ||||||||||||||||||||||||||||  |||||| ||| | |||||||||||||    
T  31377800 tgtaatttgaagattatttggttttggaccttcatggcatcatattacaaaattta 31377745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 31989604 - 31989549
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    ||||||||||||||| ||||||||||||  |||||| ||| |||||||||||||||    
T  31989604 tgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaattta 31989549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 18155311 - 18155361
Alignment:
Q  159 aaccctgtaatttgaagattatttggttttggaatttcatgacataaaatt 209  Q
    |||| ||||||||||||||||||| |||||||| |||||||||| ||||||    
T  18155311 aaccttgtaatttgaagattatttcgttttggactttcatgacaaaaaatt 18155361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 13315905 - 13315955
Alignment:
Q  140 aaaaattgtttagacttcaaa-ccctgtaatttgaagattatttggttttg 189  Q
    ||||| |||||||| |||||  |||||||||||||||||||||||||||||    
T  13315905 aaaaactgtttagatttcaacgccctgtaatttgaagattatttggttttg 13315955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 35791269 - 35791180
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||||| | ||||||||| |||||| |||| ||||  |  |||||| ||| |||||||||||||||| ||| |||||    
T  35791269 aaaaattgtttagatttcaa-ctctgtaatttaaagattctttgattttaaaccttcatgccatcaaattacaaaatttaaggtactttcg 35791180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 41906012 - 41906096
Alignment:
Q  103 tgtaatattagcaatttccacattatcctcctttaataaaaa-ttgtttagacttcaaaccctgtaatttgaagattatttggtttt 188  Q
    |||||||||||| |||| ||  |||||| ||||||| ||||| |||||||||  || |||||||||||||||||| |||||||||||    
T  41906012 tgtaatattagcgattttcagtttatccccctttaaaaaaaatttgtttaga-atccaaccctgtaatttgaaga-tatttggtttt 41906096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 16590507 - 16590555
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttg 189  Q
    |||||||||||||| ||| ||| |||||||||||||||| ||||||||||    
T  16590507 aaaaattgtttaga-ttccaactctgtaatttgaagattttttggttttg 16590555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 24486596 - 24486649
Alignment:
Q  167 aatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||| ||| ||| |||||||| ||||||||||| ||||| ||||||||||    
T  24486596 aatttgaaaattgtttagttttggactttcatgacatcaaatttcaaaatttaa 24486649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 11915091 - 11915127
Alignment:
Q  155 ttcaaaccctgtaatttgaagattatttggttttgga 191  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  11915091 ttcaaaccctataatttgaagattctttggttttgga 11915127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 49533337 - 49533250
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtatttt 228  Q
    |||||||||||||| ||  |||| | ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  49533337 aaaaattgtttaga-ttataaccttataatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaacgtatttt 49533250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 16734351 - 16734267
Alignment:
Q  144 attgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||| |||||  ||||||||||||||||| |||| |||| ||  |||||| |||||||||||||||||||| |||||||||    
T  16734351 attgtttagatttcaa--cctgtaatttgaagattctttgattttagaccttcatggcataaaattacaaaatttaaggtattttcg 16734267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 49277722 - 49277801
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||| ||||||||| ||| |||| ||||||||||| ||||||||||||||||  |||||| ||| ||||||||||||||||    
T  49277722 aaaatttgtttaga-ttccaaccgtgtaatttgaaaattatttggttttggaccttcatggcatcaaattacaaaatttaa 49277801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 8678828 - 8678974
Alignment:
Q  86 ttaatatatgtttatc---atgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattattt 182  Q
    |||||||||||||| |   ||||||||||| | |||||||  ||| || ||| ||| |||||||||||||| |||||||| ||||||||||||||| |||    
T  8678828 ttaatatatgtttacccctatgtaatattatcgatttccagtttaccc-cctgtaaaaaaaattgtttaga-ttcaaaccttgtaatttgaagatttttt 8678925  T
Q  183 gg-ttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
       |||||||  |||||| ||| |||||||||||||||| ||| |||||    
T  8678926 ttattttggaccttcatggcatcaaattacaaaatttaaggtactttcg 8678974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 21744998 - 21744927
Alignment:
Q  146 tgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattt 218  Q
    |||||||| ||| |||| ||||||||||| ||| |||||||||||| ||||||||| | ||||||||||||||    
T  21744998 tgtttaga-ttccaaccatgtaatttgaatattctttggttttggattttcatgacgtgaaattacaaaattt 21744927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 8810183 - 8810094
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||| ||| ||||| || ||||||||||||||| |||  |||||||  |||||||||| |||||| ||||||||| ||| |||||    
T  8810183 aaaaattgttaagatttcaa-ccttgtaatttgaagatttttttattttggaccttcatgacatcaaattataaaatttaaggtactttcg 8810094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 9780387 - 9780475
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttc 229  Q
    |||||||||||||| ||| |||||||||||||||||||| |||| |||| ||  | |||| ||| |||||| ||||||||| ||| ||||    
T  9780387 aaaaattgtttaga-ttccaaccctgtaatttgaagattctttgattttcgacctacatggcatcaaattaaaaaatttaaggtactttc 9780475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 5283905 - 5283826
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||||| ||| || ||||||||||||||||| |||| ||||| |  |||||| ||| |||||| |||||||||    
T  5283905 aaaaattgtttaga-ttccaatcctgtaatttgaagattttttgattttgaaccttcatggcatcaaattaaaaaatttaa 5283826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 25786226 - 25786276
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttgga 191  Q
    |||| ||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  25786226 aaaatttgtttaga-ttccaaccctgtaatttaaagattatttggttttgga 25786276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 13555677 - 13555739
Alignment:
Q  159 aaccctgtaatttgaaga-ttatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||||||||| || |||| |||||||  |||||||||| |||||| |||||||||    
T  13555677 aaccctgtaatttgaagatttttttgattttggaccttcatgacatcaaattataaaatttaa 13555739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 9780586 - 9780545
Alignment:
Q  159 aaccctgtaatttgaagattatttggttttggaatttcatga 200  Q
    |||| ||||||||||||||||||||||||||||  |||||||    
T  9780586 aaccatgtaatttgaagattatttggttttggaccttcatga 9780545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 16734103 - 16734186
Alignment:
Q  103 tgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggtttt 188  Q
    |||||||||||| |||| ||  ||| |||| | ||| |||||||||||||| ||| |||||||||||||||||||| | |||||||    
T  16734103 tgtaatattagcgattttcagtttaccctc-tgtaaaaaaaattgtttaga-ttccaaccctgtaatttgaagattctatggtttt 16734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 16875932 - 16876019
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtatttt 228  Q
    |||||||||||||| | ||| || |||| |||||||||| |||| |||| ||  || ||| ||| |||||||||||||||| |||||||    
T  16875932 aaaaattgtttagattacaa-ccttgtagtttgaagattctttgattttcgacctttatggcatcaaattacaaaatttaaggtatttt 16876019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 33864326 - 33864237
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||| |||||||||||||||||||| ||||||||||||  || ||| ||| |||||||||||||||| |||||||||    
T  33864326 aaaaattgtttaga-ttccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttcg 33864237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 33916596 - 33916685
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||| |||||||||||||||||||| ||||||||||||  || ||| ||| |||||||||||||||| |||||||||    
T  33916596 aaaaattgtttaga-ttccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttcg 33916685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 7261591 - 7261516
Alignment:
Q  141 aaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatt 217  Q
    ||||||||||||| ||| |||||||||||||||| ||| ||||||||||||  |||||||||| ||||| |||||||    
T  7261591 aaaattgtttaga-ttccaaccctgtaatttgaacattctttggttttggaccttcatgacatcaaatttcaaaatt 7261516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 13437122 - 13437033
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||| ||||||||| ||| |||| |||||||||| |||| |||| |||||||  |||||||||| |||||||||||||||| ||| |||||    
T  13437122 aaaatttgtttaga-ttccaaccgtgtaatttgatgattttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcg 13437033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 22315205 - 22315282
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattt 218  Q
    |||||||||||||| ||| |||||||||||||||||||| |||| |||||||  |||||| ||| | ||||||||||||    
T  22315205 aaaaattgtttaga-ttccaaccctgtaatttgaagattttttgattttggaccttcatggcatcatattacaaaattt 22315282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 5469660 - 5469510
Alignment:
Q  79 taaaggattaatatatgttta--tcatgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaaga 176  Q
    |||||| ||||||||||||||  || | |||||||||| ||||||   |||   |||| ||| |||||||||||||| ||| |||| |||||||||||      
T  5469660 taaagggttaatatatgtttacctcctttaatattagcgatttccggtttactttcctgtaaaaaaaattgtttaga-ttccaaccttgtaatttgaatt 5469562  T
Q  177 ttatttggttttggaatttcatgacataaaattacaaaatttaacgtatttt 228  Q
    || |||| |||||||  |||||| ||| ||| |||||||||||| |||||||    
T  5469561 ttttttgattttggaccttcatggcatcaaactacaaaatttaaggtatttt 5469510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 33864051 - 33864158
Alignment:
Q  83 ggattaatatatgttta-tcatgtaatattagcaatttccacattatcctcctttaataaaaa-ttgtttagacttcaaaccctgtaatttgaagattat 180  Q
    ||||||||| ||||||| || |||||||||||| |||| |   |||  ||||||||| ||||| ||||||||| ||| |||||||||||||||||||| |    
T  33864051 ggattaatacatgtttactcctgtaatattagcgattttcggtttacactcctttaaaaaaaaattgtttaga-ttccaaccctgtaatttgaagattct 33864149  T
Q  181 ttggttttg 189  Q
    |||||||||    
T  33864150 ttggttttg 33864158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 33916871 - 33916764
Alignment:
Q  83 ggattaatatatgttta-tcatgtaatattagcaatttccacattatcctcctttaataaaaa-ttgtttagacttcaaaccctgtaatttgaagattat 180  Q
    ||||||||| ||||||| || |||||||||||| |||| |   |||  ||||||||| ||||| ||||||||| ||| |||||||||||||||||||| |    
T  33916871 ggattaatacatgtttactcctgtaatattagcgattttcggtttacactcctttaaaaaaaaattgtttaga-ttccaaccctgtaatttgaagattct 33916773  T
Q  181 ttggttttg 189  Q
    |||||||||    
T  33916772 ttggttttg 33916764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 22151971 - 22152026
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    ||||||||||||||| ||| ||||||||  |||||||||| ||||| |||||||||    
T  22151971 tgtaatttgaagatttttttgttttggaccttcatgacatcaaattgcaaaattta 22152026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 44078800 - 44078724
Alignment:
Q  143 aattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    ||||||||||| ||| |||| ||||||||||||||  ||| ||||||||  ||| | |||||||||| ||||||||||    
T  44078800 aattgtttaga-ttccaaccttgtaatttgaagatccttttgttttggaccttcctaacataaaatttcaaaatttaa 44078724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 24023289 - 24023226
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtatttt 228  Q
    |||||||| |||||||||||||||||||  |||| ||||| |||||  ||||||||| |||||||    
T  24023289 tgtaattt-aagattatttggttttggaccttcacgacatcaaatttgaaaatttaaggtatttt 24023226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 25059885 - 25059949
Alignment:
Q  166 taatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||| || ||| |||| |||||||  |||| ||||| |||||||||||||||| |||||||||    
T  25059885 taatttaaatattttttgattttggaccttcaagacatcaaattacaaaatttaaggtattttcg 25059949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 25159183 - 25159045
Alignment:
Q  90 tatatgtttatcatgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttg 189  Q
    |||||||||||| |||||||||||| ||||||   ||||| ||  | || |||||||||||||| ||| |||| ||||||||||| ||| |||| |||||    
T  25159183 tatatgtttatcctgtaatattagcgatttccgatttatc-tctgtaaaaaaaaattgtttaga-ttctaaccttgtaatttgaatattttttgattttg 25159086  T
Q  190 gaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    ||  |||||| ||| |||||||||||||||| |||||||||    
T  25159085 gacgttcatggcatcaaattacaaaatttaaggtattttcg 25159045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 55257663 - 55257788
Alignment:
Q  103 tgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgaca 202  Q
    |||||||||||| ||||||   ||| || ||| ||| |||||||||||||| ||| |||||| ||||||||||||| |||  |||||||  |||||| ||    
T  55257663 tgtaatattagcgatttccggtttaccc-cctgtaaaaaaaattgtttaga-ttccaaccctataatttgaagatttttttattttggaccttcatggca 55257760  T
Q  203 taaaattacaaaatttaacgtattttcg 230  Q
    | |||||||||||||||| ||| |||||    
T  55257761 tcaaattacaaaatttaaggtactttcg 55257788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 5303755 - 5303666
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||| ||||||||| ||| |||||||||||||||||||| ||||||||| ||  |||||||||| |||||||| || |||| ||| |||||    
T  5303755 aaaatttgtttaga-ttccaaccctgtaatttgaagattctttggttttagaccttcatgacatcaaattacagaacttaaggtactttcg 5303666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 7013224 - 7013303
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||||| |||||  | | |||||||||||||||||| ||||||| |||||||  || ||||||||||||||||    
T  7013224 aaaaattgtttagatttcaattc-tataatttgaagattatttgattttggactttcatggtatcaaattacaaaatttaa 7013303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 18359290 - 18359369
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||  | |||| ||| ||||||||||||||||    
T  18359290 aaaaattgtttaga-ttccaaccctgtaatttgaagattctttagttttagatatacatggcatcaaattacaaaatttaa 18359369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 43426510 - 43426431
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||||| ||| |||||||||||||||||||| |||| |||| ||  |||||  ||| ||||||||||||||||    
T  43426510 aaaaattgtttaga-ttcgaaccctgtaatttgaagattttttgattttagaccttcatagcatcaaattacaaaatttaa 43426431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 25158833 - 25158906
Alignment:
Q  125 ttatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatga 200  Q
    |||||||||| ||| |||||||||||||| ||| |||||||||||||||| |||  |||||||||||  |||||||    
T  25158833 ttatcctcctgtaaaaaaaattgtttaga-ttccaaccctgtaatttgaatatt-cttggttttggacattcatga 25158906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 30226351 - 30226296
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    ||||||||||||||| |||| |||||||  |||||||||  |||||||||||||||    
T  30226351 tgtaatttgaagattctttgattttggaccttcatgacaacaaattacaaaattta 30226296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 7308313 - 7308224
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||| ||| ||| |||||| ||||||||||||| |||  |||| ||  |||||| ||| |||||||||||||||| ||| |||||    
T  7308313 aaaaattgttcaga-ttccaaccctataatttgaagatttttttatttttgaccttcatggcatcaaattacaaaatttaaggtactttcg 7308224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 9235592 - 9235503
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||||| |||||||||||||||||| |||| |||||||  |||||| ||| |||||||||||||||| ||| |||||    
T  9235592 aaaaattgtttagatttcaa-ccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttcg 9235503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 23289155 - 23289066
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||| |||||||||||||||||||| |||   ||||||  |||||| ||| |||||||||||||||| ||| |||||    
T  23289155 aaaaattgtttaga-ttccaaccctgtaatttgaagattttttaactttggaccttcatggcatcaaattacaaaatttaaggtactttcg 23289066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 13373235 - 13373322
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtatttt 228  Q
    |||||||||||| | ||||| | |||||||||||||||| |||||||||| |  ||| || ||| |||||||||||||||| |||||||    
T  13373235 aaaaattgtttatatttcaa-ctctgtaatttgaagattctttggttttgaaccttcctggcatcaaattacaaaatttaaggtatttt 13373322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 8980802 - 8980747
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    ||||||||||||||| ||| ||||||||  |||||||||| |||||||||||||||    
T  8980802 tgtaatttgaagattctttagttttggaccttcatgacatcaaattacaaaattta 8980747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 13980086 - 13980022
Alignment:
Q  135 ttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatga 200  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||| |||||||  |||||||    
T  13980086 ttaaaaaaaattgtttaga-ttctaaccctgtaatttgaagattctttgattttggaccttcatga 13980022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 11311303 - 11311367
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtatttt 228  Q
    ||||||||||||||||| || ||||| | |||||||||||   |||  |||||||||||||||||    
T  11311303 tgtaatttgaagattatatgattttgaattttcatgacatcgtatttaaaaatttaacgtatttt 11311367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 2936182 - 2936271
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    ||||| |||||||| ||| |||| ||||||||||| ||||||||||||| ||  |||||||||| |||||||||||||||| ||| |||||    
T  2936182 aaaaaatgtttaga-ttccaaccatgtaatttgaaaattatttggttttagaccttcatgacatcaaattacaaaatttaaggtactttcg 2936271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 42957419 - 42957508
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||| ||||||||||||||||  || |||| |||||||  |||||||||| |||||||||||||||| ||| |||||    
T  42957419 aaaaattgtttaga-ttctaaccctgtaatttgaattttttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcg 42957508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 43393995 - 43393923
Alignment:
Q  159 aaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcga 231  Q
    |||||||||||||||||||| |||  |||||||  |||||| ||| |||||||||||||||| ||| ||||||    
T  43393995 aaccctgtaatttgaagatttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttcga 43393923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 1853403 - 1853314
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||| ||||||||| ||| |||| ||||||||||||||| |||| |||||||  |||||| ||| ||||| |||||||||| ||| |||||    
T  1853403 aaaatttgtttaga-ttccaaccttgtaatttgaagattttttgattttggaccttcatggcatcaaatttcaaaatttaaggtactttcg 1853314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 27082838 - 27082756
Alignment:
Q  103 tgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggtttt 188  Q
    |||||||||||| |||||||  |||  ||||| ||| |||| || |||||| ||| ||||||||||||||||||||||||||||||    
T  27082838 tgtaatattagcgatttccagttta--ctcctgtaaaaaaatttatttaga-ttccaaccctgtaatttgaagattatttggtttt 27082756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 27195463 - 27195545
Alignment:
Q  103 tgtaatattagcaatttccacattatcctcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggtttt 188  Q
    |||||||||||| |||||||  |||  ||||| ||| |||| || |||||| ||| ||||||||||||||||||||||||||||||    
T  27195463 tgtaatattagcgatttccagttta--ctcctgtaaaaaaatttatttaga-ttccaaccctgtaatttgaagattatttggtttt 27195545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 24813037 - 24812949
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttc 229  Q
    |||| ||||||||| ||||| |||||||||||||||||| ||||||||| ||  || | | ||| |||||||||||||||| ||| ||||    
T  24813037 aaaatttgtttagatttcaa-ccctgtaatttgaagattctttggttttagacctttaaggcatcaaattacaaaatttaaggtactttc 24812949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 9689300 - 9689362
Alignment:
Q  159 aaccctgtaatttgaaga-ttatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||||||||| || |||| |||||||  |||||||||| |||||| |||||||||    
T  9689300 aaccctgtaatttgaagatttttttgattttggaccttcatgacatcaaattataaaatttaa 9689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 19377196 - 19377106
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||| ||||||||| | ||| |||||||||||||||||  |||  |||||||  |||||| | | |||||||||||||||| ||| |||||    
T  19377196 aaaatttgtttagattccaacccctgtaatttgaagatatttttattttggaccttcatggcgtcaaattacaaaatttaaggtactttcg 19377106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 25601793 - 25601882
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||| ||| |||| ||||||||||||||| ||||| ||   |  ||||||| || |||||||||||||||| ||| |||||    
T  25601793 aaaaattgtttaga-ttccaaccttgtaatttgaagattttttggcttaaaaccttcatgatatcaaattacaaaatttaatgtactttcg 25601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 22610128 - 22610189
Alignment:
Q  167 aatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtatttt 228  Q
    |||||||||||||||| | |||||| ||| |||| || |||||| ||||||||| |||||||    
T  22610128 aatttgaagattatttagctttggacttttatgatatcaaattataaaatttaaagtatttt 22610189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 1853161 - 1853219
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatga 200  Q
    |||||||||||||| |||  ||||||||||||||||||| ||||||||||||  |||||||    
T  1853161 aaaaattgtttaga-ttcccaccctgtaatttgaagatt-tttggttttggaccttcatga 1853219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 10931951 - 10932009
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatga 200  Q
    |||||||||||||| ||||| |||||||||||||||| | ||||||||||||  |||||||    
T  10931951 aaaaattgtttagatttcaa-ccctgtaatttgaagaat-tttggttttggaccttcatga 10932009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 25167135 - 25167069
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||||||||||| |||||||  |||||| ||| |||||||||||||||| ||| |||||    
T  25167135 tgtaatttgaagattatttgattttggatcttcatggcatcaaattacaaaatttaaggtactttcg 25167069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 33198574 - 33198662
Alignment:
Q  131 tcctttaataaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||| ||| ||||||| |||||| ||| | |||| ||||||||||||| ||||||||| ||  |||||| ||| ||||||||||||||||    
T  33198574 tcctgtaaaaaaaattatttaga-ttccatccctataatttgaagattctttggttttagacattcatggcatcaaattacaaaatttaa 33198662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 3816761 - 3816714
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggtttt 188  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  3816761 aaaaattgtttagatttcaa-ccctgtaatttgaagattctttggtttt 3816714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 9044704 - 9044625
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    |||||||||||| | ||| |||| |||||||||||||||||||| |||||||  |||||| ||| |||||| | |||||||    
T  9044704 aaaaattgtttaaa-ttccaaccttgtaatttgaagattatttgattttggaccttcatggcatcaaattatataatttaa 9044625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 9662968 - 9662912
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaa 220  Q
    ||||||||||||||| |||| ||||| |  |||||||||| ||||||||||||||||    
T  9662968 tgtaatttgaagattttttgattttgaaccttcatgacatcaaattacaaaatttaa 9662912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 20757684 - 20757621
Alignment:
Q  167 aatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||||||||| |||||||||||   |||||||||| ||||||||||| |||| ||| |||||    
T  20757684 aatttgaagattttttggttttggtcgttcatgacatcaaattacaaaacttaaggtactttcg 20757621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 6759741 - 6759807
Alignment:
Q  163 ctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttc 229  Q
    ||||||||||| |||| ||| |||||||| |||||||| || ||||| |||||||||| ||| ||||    
T  6759741 ctgtaatttgatgattctttagttttggattttcatgagatcaaatttcaaaatttaaggtactttc 6759807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 334907 - 334994
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttc 229  Q
    |||||||||||||| || || || ||||||||||||||| ||| |||| |||  |||||||||| |||||| ||||||||| ||| ||||    
T  334907 aaaaattgtttagattttaa-ccttgtaatttgaagatt-tttagtttaggacattcatgacattaaattataaaatttaaagtactttc 334994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 13389 - 13299
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttgg-ttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||| ||||||||| ||| |||| ||||||||||||||| ||| | |||||||  |||||||||| |||||||||||||||| ||| |||||    
T  13389 aaaatttgtttaga-ttccaaccttgtaatttgaagatttttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcg 13299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 306759 - 306704
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaattta 219  Q
    ||||||||||||||| ||||||||||||  |||||| ||| |||||||||||||||    
T  306759 tgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaattta 306704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 316492 - 316540
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttg 189  Q
    |||||||||||||| || || |||||||||||||||||||||||||||||    
T  316492 aaaaattgtttagattttaa-ccctgtaatttgaagattatttggttttg 316540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 18724 - 18760
Alignment:
Q  164 tgtaatttgaagattatttggttttggaatttcatga 200  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18724 tgtaatttgaagattttttggttttggaatttcatga 18760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 82434 - 82363
Alignment:
Q  159 aaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    |||||| |||||| |||||| |||| |||||||  ||||||| || |||||||||||||||| ||| |||||    
T  82434 aaccctttaatttaaagattgtttgattttggaccttcatgatatcaaattacaaaatttaaggtactttcg 82363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 25984 - 25896
Alignment:
Q  140 aaaaattgtttagacttcaaaccctgtaatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattttcg 230  Q
    ||||||| |||||| ||| |||||| |||||||||| || |||| |||||||  |||||| ||| |||||||||||||||| ||| |||||    
T  25984 aaaaattatttaga-ttccaaccct-taatttgaaggttttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttcg 25896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 23194 - 23254
Alignment:
Q  167 aatttgaagattatttggttttggaatttcatgacataaaattacaaaatttaacgtattt 227  Q
    |||||||||| | |||| |||| ||  |||||| ||| |||||||||||||||||||||||    
T  23194 aatttgaagactttttgattttagaccttcatggcatcaaattacaaaatttaacgtattt 23254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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