View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10947_low_9 (Length: 251)

Name: NF10947_low_9
Description: NF10947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10947_low_9
NF10947_low_9
[»] chr7 (2 HSPs)
chr7 (21-214)||(41688782-41688965)
chr7 (52-180)||(41681512-41681643)
[»] chr4 (4 HSPs)
chr4 (137-213)||(44668640-44668716)
chr4 (137-213)||(44687916-44687992)
chr4 (140-216)||(45088954-45089030)
chr4 (162-213)||(45095418-45095469)
[»] chr1 (10 HSPs)
chr1 (158-222)||(43983344-43983408)
chr1 (140-216)||(44004751-44004827)
chr1 (163-216)||(43986159-43986212)
chr1 (145-219)||(43908406-43908480)
chr1 (157-215)||(42414880-42414938)
chr1 (162-216)||(43917832-43917886)
chr1 (148-214)||(43990943-43991009)
chr1 (164-215)||(23682390-23682441)
chr1 (164-222)||(19567318-19567376)
chr1 (162-211)||(43993626-43993675)
[»] chr2 (6 HSPs)
chr2 (141-216)||(24002338-24002413)
chr2 (140-215)||(20596094-20596169)
chr2 (137-222)||(20575447-20575532)
chr2 (158-215)||(20585241-20585298)
chr2 (158-215)||(20603568-20603625)
chr2 (158-215)||(20895404-20895461)
[»] chr8 (3 HSPs)
chr8 (140-214)||(42694391-42694465)
chr8 (162-222)||(42700091-42700151)
chr8 (144-216)||(24041718-24041790)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 41688965 - 41688782
Alignment:
Q  21 tctgaattggatggatgataaaagaggtgttagtgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgctgtatgttttgagtaattgtct 120  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  41688965 tctgaattggatggatgataaaagaggtgttactgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgctgtatgtt--------ttgtct 41688874  T
Q  121 ttgtgtgtgnnnnnnnaacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 214  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41688873 ttgtgtgt--ttttttaacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 41688782  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 41681643 - 41681512
Alignment:
Q  52 agtgttgctgcctcaaagtgatggtgactacatgtgcaaagatatgc---tgtatgttttgagtaattgtctttgtgtgtgnnnnnnnaacaaaactcat 148  Q
    ||||||| ||||||||||||| ||||||| | | | ||||||||||    || ||||||||||| || | |||||||||||       ||||| ||||||    
T  41681643 agtgttgttgcctcaaagtgacggtgacttcgtatacaaagatatgaatatgcatgttttgagtgatcgcctttgtgtgtgttttttgaacaagactcat 41681544  T
Q  149 tgggttgcatggttgatgaaagagtatagagt 180  Q
    |||||||  |||||||||||||||||| ||||    
T  41681543 tgggttgtgtggttgatgaaagagtatggagt 41681512  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 44668716 - 44668640
Alignment:
Q  137 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccc 213  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  44668716 aacaaaactcattgggttgtgtggatgatgaaagagtatggagttgttgagtcatggactaaactgatgatcatccc 44668640  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 44687992 - 44687916
Alignment:
Q  137 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccc 213  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  44687992 aacaaaactcattgggttgtgtggatgatgaaagagtatggagttgttgagtcatggactaaactgatgatcatccc 44687916  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 45089030 - 45088954
Alignment:
Q  140 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 216  Q
    ||||||||||||||||  ||| |||||||||||||| ||||| ||||||| ||| |||||||||| |||||||||||    
T  45089030 aaaactcattgggttgtgtggatgatgaaagagtatggagttattgagtcgtgggctaaattgataatcatccctca 45088954  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 45095469 - 45095418
Alignment:
Q  162 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccc 213  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  45095469 tgatgaaagagtatggagttgttgagtcatggactaaaatgatgatcatccc 45095418  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 43983408 - 43983344
Alignment:
Q  158 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||    
T  43983408 tggttgatgaaagagtatggagttgttgagtcatggactaaattcatgatcatccctcatgagaa 43983344  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 44004827 - 44004751
Alignment:
Q  140 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 216  Q
    ||||||||||||  ||  ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  44004827 aaaactcattggactgtgtggatgatgaaagagtatggagttgctgagtcatggactaaattgatgatcatccctca 44004751  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 43986212 - 43986159
Alignment:
Q  163 gatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  43986212 gatgaaagagtatggagttgttgagtcatggactaaattgatgattatccctca 43986159  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 43908406 - 43908480
Alignment:
Q  145 tcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacga 219  Q
    ||||||| ||| |||| |||||||||||||| |||||| | ||||||||||||||||| | ||||||||||||||    
T  43908406 tcattggattgtatggatgatgaaagagtatggagttgctaagtcatggactaaattgtttatcatccctcacga 43908480  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 42414880 - 42414938
Alignment:
Q  157 atggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 215  Q
    ||||||||||||| ||||| |||||  |||||| |||||||||||||||||||||||||    
T  42414880 atggttgatgaaacagtatggagttactgagtcttggactaaattgatgatcatccctc 42414938  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 43917832 - 43917886
Alignment:
Q  162 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 216  Q
    |||||||||||| | ||||| ||||||||||||||||||| ||||||||||||||    
T  43917832 tgatgaaagagtgtggagtttttgagtcatggactaaattcatgatcatccctca 43917886  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 43991009 - 43990943
Alignment:
Q  148 ttgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 214  Q
    ||||||||  ||| |||||||||||||| |  || ||||||||||||||||||||||||||||||||    
T  43991009 ttgggttgtgtggatgatgaaagagtatggcattattgagtcatggactaaattgatgatcatccct 43990943  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 23682390 - 23682441
Alignment:
Q  164 atgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 215  Q
    |||||||||||| |||||| |||||||||||||  ||||| |||||||||||    
T  23682390 atgaaagagtatggagttgctgagtcatggactgtattgacgatcatccctc 23682441  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 19567376 - 19567318
Alignment:
Q  164 atgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 222  Q
    |||||||||||| |||||| |||||||||||||| |||||  |||||| |||| |||||    
T  19567376 atgaaagagtatggagttgctgagtcatggactatattgacaatcatctctcatgagaa 19567318  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 43993675 - 43993626
Alignment:
Q  162 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatc 211  Q
    |||||||| ||||| ||||| ||||||||||||||||||| || ||||||    
T  43993675 tgatgaaatagtatggagtttttgagtcatggactaaattcataatcatc 43993626  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 24002338 - 24002413
Alignment:
Q  141 aaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 216  Q
    |||||||||||||||  ||| |||||||| ||||  ||||||||||||||||||| |||||||  |||||||||||    
T  24002338 aaactcattgggttgtgtggatgatgaaaaagtacggagttgttgagtcatggacaaaattgaaaatcatccctca 24002413  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 20596169 - 20596094
Alignment:
Q  140 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 215  Q
    ||||||||||||| |   ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20596169 aaaactcattgggatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20596094  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 20575532 - 20575447
Alignment:
Q  137 aacaaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 222  Q
    ||||||||||||| |||| ||||||||||||||   ||| || ||| ||| || |||||||  |||||||| |||||||| |||||    
T  20575532 aacaaaactcatttggtttcatggttgatgaaaatatatggaattgctgaatcttggactaggttgatgatgatccctcatgagaa 20575447  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 20585298 - 20585241
Alignment:
Q  158 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 215  Q
    ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20585298 tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20585241  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 20603625 - 20603568
Alignment:
Q  158 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 215  Q
    ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20603625 tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20603568  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 20895404 - 20895461
Alignment:
Q  158 tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctc 215  Q
    ||||| |||||| | ||| |||||| |||||||||||||| ||||||||| |||||||    
T  20895404 tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctc 20895461  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 42694391 - 42694465
Alignment:
Q  140 aaaactcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct 214  Q
    |||| |||||||| || |||| |||||||  | ||| |||||  |||||||||||||||||||||||||||||||    
T  42694391 aaaaatcattggggtgtatggatgatgaatcaatatggagttactgagtcatggactaaattgatgatcatccct 42694465  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 42700091 - 42700151
Alignment:
Q  162 tgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctcacgagaa 222  Q
    |||||||| | ||| |||||| |||||||||||||||||||||| |||| ||||| |||||    
T  42700091 tgatgaaacaatatggagttgctgagtcatggactaaattgatgttcattcctcatgagaa 42700151  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 24041790 - 24041718
Alignment:
Q  144 ctcattgggttgcatggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccctca 216  Q
    ||||||||||||  ||| |||||||| || | || ||||||||||||||||| ||| |||  |||||||||||    
T  24041790 ctcattgggttgtgtggatgatgaaaaagaacagcgttgttgagtcatggacaaaactgaaaatcatccctca 24041718  T

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